Information for 19-ATTTATGCTT (Motif 21)

G T C A C G A T A C G T A C G T G T C A C G A T A C T G A G T C A G C T A C G T
Reverse Opposite:
C G T A C T G A C T A G G T A C G C T A A C G T G T C A C G T A C G T A A C G T
p-value:1e-8
log p-value:-1.920e+01
Information Content per bp:1.851
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif56.5
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets47.1 +/- 23.9bp
Average Position of motif in Background56.0 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--ATTTATGCTT
TGATTTATGGCC
 A C G T A C G T G T C A C G A T A C G T A C G T G T C A C G A T A C T G A G T C A G C T A C G T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ATTTATGCTT-----
TNNATTATGCATANNTT
 A C G T A C G T G T C A C G A T A C G T A C G T G T C A C G A T A C T G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

PB0176.1_Sox5_2/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----ATTTATGCTT
NNCTNAATTATGANN
 A C G T A C G T A C G T A C G T A C G T G T C A C G A T A C G T A C G T G T C A C G A T A C T G A G T C A G C T A C G T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATTTATGCTT
NTGATTTATGGCC
 A C G T A C G T A C G T G T C A C G A T A C G T A C G T G T C A C G A T A C T G A G T C A G C T A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ATTTATGCTT
TGATTTATGGC-
 A C G T A C G T G T C A C G A T A C G T A C G T G T C A C G A T A C T G A G T C A G C T A C G T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:6
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:ATTTATGCTT-
----AAGCTTG
 G T C A C G A T A C G T A C G T G T C A C G A T A C T G A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ATTTATGCTT
DGWTTTATGRCN
 A C G T A C G T G T C A C G A T A C G T A C G T G T C A C G A T A C T G A G T C A G C T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

HOXA5/MA0158.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATTTATGCTT
AATTAGTG---
 A C G T G T C A C G A T A C G T A C G T G T C A C G A T A C T G A G T C A G C T A C G T
T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:ATTTATGCTT-----
-TTCACGCATGAGTT
 G T C A C G A T A C G T A C G T G T C A C G A T A C T G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ATTTATGCTT
TGAATTATGCAT
 A C G T A C G T G T C A C G A T A C G T A C G T G T C A C G A T A C T G A G T C A G C T A C G T
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T