Information for 5-VTGGGAAAKCCCC (Motif 5)

T G C A C A G T C T A G C T A G T C A G C T G A G T C A C G T A A C G T G A T C G T A C T G A C G T A C
Reverse Opposite:
C A T G A C T G A C T G C T A G T G C A G C A T A C G T A G C T A G T C A G T C A G T C G T C A A C G T
p-value:1e-22
log p-value:-5.209e+01
Information Content per bp:1.638
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif6.08%
Number of Background Sequences with motif492.9
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets48.3 +/- 25.8bp
Average Position of motif in Background49.5 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.92
Offset:2
Orientation:reverse strand
Alignment:VTGGGAAAKCCCC-
--GGGAAATCCCCN
 T G C A C A G T C T A G C T A G T C A G C T G A G T C A C G T A A C G T G A T C G T A C T G A C G T A C A C G T
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.87
Offset:3
Orientation:reverse strand
Alignment:VTGGGAAAKCCCC
---GGAAANCCCC
 T G C A C A G T C T A G C T A G T C A G C T G A G T C A C G T A A C G T G A T C G T A C T G A C G T A C
A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:VTGGGAAAKCCCC
--GGAAATCCCC-
 T G C A C A G T C T A G C T A G T C A G C T G A G T C A C G T A A C G T G A T C G T A C T G A C G T A C
A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.85
Offset:3
Orientation:reverse strand
Alignment:VTGGGAAAKCCCC
---GGAAATTCCC
 T G C A C A G T C T A G C T A G T C A G C T G A G T C A C G T A A C G T G A T C G T A C T G A C G T A C
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:VTGGGAAAKCCCC-
-AGGGGAATCCCCT
 T G C A C A G T C T A G C T A G T C A G C T G A G T C A C G T A A C G T G A T C G T A C T G A C G T A C A C G T
A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.80
Offset:1
Orientation:forward strand
Alignment:VTGGGAAAKCCCC
-GGGGGAATCCCC
 T G C A C A G T C T A G C T A G T C A G C T G A G T C A C G T A A C G T G A T C G T A C T G A C G T A C
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.78
Offset:3
Orientation:forward strand
Alignment:VTGGGAAAKCCCC
---GGAAATTCCC
 T G C A C A G T C T A G C T A G T C A G C T G A G T C A C G T A A C G T G A T C G T A C T G A C G T A C
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.76
Offset:1
Orientation:forward strand
Alignment:VTGGGAAAKCCCC-
-AGGGGAATCCCCT
 T G C A C A G T C T A G C T A G T C A G C T G A G T C A C G T A A C G T G A T C G T A C T G A C G T A C A C G T
A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-VTGGGAAAKCCCC
CSTGGGAAAD----
 A C G T T G C A C A G T C T A G C T A G T C A G C T G A G T C A C G T A A C G T G A T C G T A C T G A C G T A C
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:10
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-VTGGGAAAKCCCC
NATGGAAAAN----
 A C G T T G C A C A G T C T A G C T A G T C A G C T G A G T C A C G T A A C G T G A T C G T A C T G A C G T A C
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T