Information for 4-GTTTTGAATT (Motif 4)

T A C G A C G T A G C T A C G T G A C T A T C G G C T A G T C A A G C T C A G T
Reverse Opposite:
G T C A T C G A C A G T C G A T T A G C C T G A G T C A C T G A T C G A A T G C
p-value:1e-12
log p-value:-2.763e+01
Information Content per bp:1.681
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif2.92%
Number of Background Sequences with motif224.5
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets46.9 +/- 29.6bp
Average Position of motif in Background55.3 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.81
Offset:1
Orientation:forward strand
Alignment:GTTTTGAATT
-ATTTGAATT
 T A C G A C G T A G C T A C G T G A C T A T C G G C T A G T C A A G C T C A G T
A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTGAATT----
NNNTATTGAATTGNNN
 A C G T A C G T T A C G A C G T A G C T A C G T G A C T A T C G G C T A G T C A A G C T C A G T A C G T A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GTTTTGAATT--
--TTTGAAACCG
 T A C G A C G T A G C T A C G T G A C T A T C G G C T A G T C A A G C T C A G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTTTTGAATT
CCTTTGATGT
 T A C G A C G T A G C T A C G T G A C T A T C G G C T A G T C A A G C T C A G T
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

PH0100.1_Lmx1a/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTGAATT------
NNTTTTTAATTAATTCG
 A C G T T A C G A C G T A G C T A C G T G A C T A T C G G C T A G T C A A G C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T A G C G A T C G A T G C A T G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G A T C G A T A T G C A T C G

PB0123.1_Foxl1_2/Jaspar

Match Rank:6
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------GTTTTGAATT
NNTTTTGTTTTGATNT
 A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C G T A G C T A C G T G A C T A T C G G C T A G T C A A G C T C A G T
C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T

PH0091.1_Lhx1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTGAATT------
NNTTATTAATTAATNCN
 A C G T T A C G A C G T A G C T A C G T G A C T A T C G G C T A G T C A A G C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C C T G A C G A T C G A T C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T G C A T A G T C A C T G

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTTTGAATT
CCTTTGAWGT
 T A C G A C G T A G C T A C G T G A C T A T C G G C T A G T C A A G C T C A G T
A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTTTGAATT------
NNNNTGAATTCANNNC
 T A C G A C G T A G C T A C G T G A C T A T C G G C T A G T C A A G C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PH0101.1_Lmx1b/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTTTTGAATT------
AGTTTTTAATTAATTTG
 A C G T T A C G A C G T A G C T A C G T G A C T A T C G G C T A G T C A A G C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T
T C G A C T A G C G A T C G A T G C A T A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G A T C G A T G A C T A C T G