Information for 3-GRCAGCAGAGGGA (Motif 3)

A C T G T C A G A G T C C T G A A C T G A T G C G T C A A T C G C G T A A T C G C T A G T C A G G T C A
Reverse Opposite:
A C G T A G T C A G T C A T G C A C G T A T G C A C G T A T C G A G T C A G C T A C T G A G T C T A G C
p-value:1e-16
log p-value:-3.692e+01
Information Content per bp:1.795
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.46%
Number of Background Sequences with motif92.1
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets40.5 +/- 24.5bp
Average Position of motif in Background47.3 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GRCAGCAGAGGGA
CACAGCAGGGGG-
 A C T G T C A G A G T C C T G A A C T G A T G C G T C A A T C G C G T A A T C G C T A G T C A G G T C A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GRCAGCAGAGGGA-------
GCCASCAGGGGGCGCYVNNG
 A C T G T C A G A G T C C T G A A C T G A T G C G T C A A T C G C G T A A T C G C T A G T C A G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GRCAGCAGAGGGA----
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C T G T C A G A G T C C T G A A C T G A T G C G T C A A T C G C G T A A T C G C T A G T C A G G T C A A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GRCAGCAGAGGGA
AGAGRRACAGCWGAC---
 A C G T A C G T A C G T A C G T A C G T A C T G T C A G A G T C C T G A A C T G A T G C G T C A A T C G C G T A A T C G C T A G T C A G G T C A
T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GRCAGCAGAGGGA-
DCHCAGCAGGRGGCC
 A C G T A C T G T C A G A G T C C T G A A C T G A T G C G T C A A T C G C G T A A T C G C T A G T C A G G T C A A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GRCAGCAGAGGGA-----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C T G T C A G A G T C C T G A A C T G A T G C G T C A A T C G C G T A A T C G C T A G T C A G G T C A A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Myog/MA0500.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GRCAGCAGAGGGA
GACAGCTGCAG--
 A C T G T C A G A G T C C T G A A C T G A T G C G T C A A T C G C G T A A T C G C T A G T C A G G T C A
T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GRCAGCAGAGGGA
TGAGTCAGCA------
 A C G T A C G T A C G T A C T G T C A G A G T C C T G A A C T G A T G C G T C A A T C G C G T A A T C G C T A G T C A G G T C A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GRCAGCAGAGGGA
ANCAGCTG-----
 A C T G T C A G A G T C C T G A A C T G A T G C G T C A A T C G C G T A A T C G C T A G T C A G G T C A
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GRCAGCAGAGGGA
CACAGN-------
 A C T G T C A G A G T C C T G A A C T G A T G C G T C A A T C G C G T A A T C G C T A G T C A G G T C A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T