Information for 3-DGGGGAATTCCCMSAG (Motif 3)

C G A T C A T G A C T G C T A G C T A G C T G A G C T A G A C T A G C T A G T C G T A C G T A C G T C A T A G C G C T A C T A G
Reverse Opposite:
G A T C C G A T A T C G C A G T C A T G C A T G C T A G C T G A C T G A C G A T G A C T G A T C G A T C G T A C G T A C G C T A
p-value:1e-28
log p-value:-6.463e+01
Information Content per bp:1.537
Number of Target Sequences with motif92.0
Percentage of Target Sequences with motif11.39%
Number of Background Sequences with motif1389.5
Percentage of Background Sequences with motif2.84%
Average Position of motif in Targets49.0 +/- 23.2bp
Average Position of motif in Background51.0 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:DGGGGAATTCCCMSAG
NGGGGATTTCCC----
 C G A T C A T G A C T G C T A G C T A G C T G A G C T A G A C T A G C T A G T C G T A C G T A C G T C A T A G C G C T A C T A G
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.86
Offset:2
Orientation:forward strand
Alignment:DGGGGAATTCCCMSAG
--GGGGATTTCC----
 C G A T C A T G A C T G C T A G C T A G C T G A G C T A G A C T A G C T A G T C G T A C G T A C G T C A T A G C G C T A C T A G
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.85
Offset:1
Orientation:forward strand
Alignment:DGGGGAATTCCCMSAG
-GGGGATTTCC-----
 C G A T C A T G A C T G C T A G C T A G C T G A G C T A G A C T A G C T A G T C G T A C G T A C G T C A T A G C G C T A C T A G
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:4
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:DGGGGAATTCCCMSAG
--GGGGATTCCCCC--
 C G A T C A T G A C T G C T A G C T A G C T G A G C T A G A C T A G C T A G T C G T A C G T A C G T C A T A G C G C T A C T A G
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.82
Offset:2
Orientation:forward strand
Alignment:DGGGGAATTCCCMSAG
--GGGAATTTCC----
 C G A T C A T G A C T G C T A G C T A G C T G A G C T A G A C T A G C T A G T C G T A C G T A C G T C A T A G C G C T A C T A G
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:DGGGGAATTCCCMSAG
--GGGAATTTCC----
 C G A T C A T G A C T G C T A G C T A G C T G A G C T A G A C T A G C T A G T C G T A C G T A C G T C A T A G C G C T A C T A G
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.78
Offset:1
Orientation:forward strand
Alignment:DGGGGAATTCCCMSAG
-AGGGGATTCCCCT--
 C G A T C A T G A C T G C T A G C T A G C T G A G C T A G A C T A G C T A G T C G T A C G T A C G T C A T A G C G C T A C T A G
A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:DGGGGAATTCCCMSAG
-AGGGGATTCCCCT--
 C G A T C A T G A C T G C T A G C T A G C T G A G C T A G A C T A G C T A G T C G T A C G T A C G T C A T A G C G C T A C T A G
A C G T T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.67
Offset:5
Orientation:forward strand
Alignment:DGGGGAATTCCCMSAG
-----HTTTCCCASG-
 C G A T C A T G A C T G C T A G C T A G C T G A G C T A G A C T A G C T A G T C G T A C G T A C G T C A T A G C G C T A C T A G
A C G T A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:10
Score:0.61
Offset:5
Orientation:forward strand
Alignment:DGGGGAATTCCCMSAG
-----ATTTTCCATT-
 C G A T C A T G A C T G C T A G C T A G C T G A G C T A G A C T A G C T A G T C G T A C G T A C G T C A T A G C G C T A C T A G
A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T A C G T