Information for 6-AAGCCAATCA (Motif 9)

T G C A T G C A A C T G T A G C A T G C C G T A C T G A A C G T A T G C C T G A
Reverse Opposite:
G A C T T A C G T G C A G A C T G C A T T A C G A T C G T G A C A C G T A C G T
p-value:1e-12
log p-value:-2.920e+01
Information Content per bp:1.662
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif4.90%
Number of Background Sequences with motif600.4
Percentage of Background Sequences with motif1.32%
Average Position of motif in Targets53.3 +/- 26.3bp
Average Position of motif in Background50.4 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--AAGCCAATCA
ACTAGCCAATCA
 A C G T A C G T T G C A T G C A A C T G T A G C A T G C C G T A C T G A A C G T A T G C C T G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.83
Offset:1
Orientation:forward strand
Alignment:AAGCCAATCA-
-AGCCAATCGG
 T G C A T G C A A C T G T A G C A T G C C G T A C T G A A C G T A T G C C T G A A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----AAGCCAATCA-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T T G C A T G C A A C T G T A G C A T G C C G T A C T G A A C G T A T G C C T G A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:4
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---AAGCCAATCA--
NWTAAYCYAATCAWN
 A C G T A C G T A C G T T G C A T G C A A C T G T A G C A T G C C G T A C T G A A C G T A T G C C T G A A C G T A C G T
C A T G G C A T C G A T C G T A C G T A G A T C A G T C A G C T C G T A C G T A A C G T A G T C C G T A C G T A G C A T

PH0026.1_Duxbl/Jaspar

Match Rank:5
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-AAGCCAATCA------
CGACCCAATCAACGGTG
 A C G T T G C A T G C A A C T G T A G C A T G C C G T A C T G A A C G T A T G C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

Dux/MA0611.1/Jaspar

Match Rank:6
Score:0.78
Offset:3
Orientation:forward strand
Alignment:AAGCCAATCA-
---CCAATCAA
 T G C A T G C A A C T G T A G C A T G C C G T A C T G A A C G T A T G C C T G A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

DUX4/MA0468.1/Jaspar

Match Rank:7
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-AAGCCAATCA
TAATTTAATCA
 A C G T T G C A T G C A A C T G T A G C A T G C C G T A C T G A A C G T A T G C C T G A
G C A T C T G A C G T A G A C T A G C T A G C T G T C A C G T A A C G T A G T C C G T A

NFYA/MA0060.2/Jaspar

Match Rank:8
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AAGCCAATCA-------
TGGACCAATCAGCACTCT
 A C G T T G C A T G C A A C T G T A G C A T G C C G T A C T G A A C G T A T G C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:AAGCCAATCA
-TGCCAA---
 T G C A T G C A A C T G T A G C A T G C C G T A C T G A A C G T A T G C C T G A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

DUXA/MA0884.1/Jaspar

Match Rank:10
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AAGCCAATCA-
CTAATTTAATCAA
 A C G T A C G T T G C A T G C A A C T G T A G C A T G C C G T A C T G A A C G T A T G C C T G A A C G T
G A T C G A C T C T G A T C G A G A C T A G C T A G C T T G C A C T G A A C G T A G T C C G T A C T G A