Information for 10-GRTTTTTAAA (Motif 23)

A T C G T C G A G A C T C G A T C G A T G C A T C G A T G T C A C T G A C G T A
Reverse Opposite:
A C G T A G C T A C G T G C T A C G T A C G T A G C T A C T G A A G C T T A G C
p-value:1e-7
log p-value:-1.751e+01
Information Content per bp:1.613
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif5.77%
Number of Background Sequences with motif1123.0
Percentage of Background Sequences with motif2.48%
Average Position of motif in Targets52.0 +/- 23.6bp
Average Position of motif in Background49.5 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GRTTTTTAAA
CGGTTTCAAA
 A T C G T C G A G A C T C G A T C G A T G C A T C G A T G T C A C T G A C G T A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GRTTTTTAAA-
--NATTCAAAT
 A T C G T C G A G A C T C G A T C G A T G C A T C G A T G T C A C T G A C G T A A C G T
A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GRTTTTTAAA---
-CCTTTTATAGNC
 A T C G T C G A G A C T C G A T C G A T G C A T C G A T G T C A C T G A C G T A A C G T A C G T A C G T
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GRTTTTTAAA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T A T C G T C G A G A C T C G A T C G A T G C A T C G A T G T C A C T G A C G T A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GRTTTTTAAA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T A T C G T C G A G A C T C G A T C G A T G C A T C G A T G T C A C T G A C G T A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GRTTTTTAAA
NGCAATTAAA
 A T C G T C G A G A C T C G A T C G A T G C A T C G A T G T C A C T G A C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

PB0187.1_Tcf7_2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GRTTTTTAAA---
CCGTATTATAAACAA
 A C G T A C G T A T C G T C G A G A C T C G A T C G A T G C A T C G A T G T C A C T G A C G T A A C G T A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

PB0080.1_Tbp_1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GRTTTTTAAA----
NANTTATATATAANGN
 A C G T A C G T A T C G T C G A G A C T C G A T C G A T G C A T C G A T G T C A C T G A C G T A A C G T A C G T A C G T A C G T
A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GRTTTTTAAA----
--WWTRTAAACAVG
 A T C G T C G A G A C T C G A T C G A T G C A T C G A T G T C A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GRTTTTTAAA---
-NGYCATAAAWCH
 A T C G T C G A G A C T C G A T C G A T G C A T C G A T G T C A C T G A C G T A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A