Information for 6-GGCCYNCTGGAGACWG (Motif 9)

A C T G A C T G A T G C A G T C A G C T A G T C A G T C A G C T A C T G A C T G C G T A A C T G T C G A A G T C C G T A A C T G
Reverse Opposite:
A G T C C G A T A C T G A C G T A G T C A C G T A G T C A G T C C T G A A C T G A C T G C T G A A C T G A T C G G T A C A G T C
p-value:1e-7
log p-value:-1.821e+01
Information Content per bp:1.822
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.6 +/- 27.2bp
Average Position of motif in Background69.8 +/- 3.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GGCCYNCTGGAGACWG
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A T G C A G T C A G C T A G T C A G T C A G C T A C T G A C T G C G T A A C T G T C G A A G T C C G T A A C T G
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GGCCYNCTGGAGACWG
--GRTGMTRGAGCC--
 A C T G A C T G A T G C A G T C A G C T A G T C A G T C A G C T A C T G A C T G C G T A A C T G T C G A A G T C C G T A A C T G
A C G T A C G T A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GGCCYNCTGGAGACWG
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C T G A C T G A T G C A G T C A G C T A G T C A G T C A G C T A C T G A C T G C G T A A C T G T C G A A G T C C G T A A C T G
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GGCCYNCTGGAGACWG
--TCCCCTGGGGAC--
 A C T G A C T G A T G C A G T C A G C T A G T C A G T C A G C T A C T G A C T G C G T A A C T G T C G A A G T C C G T A A C T G
A C G T A C G T A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GGCCYNCTGGAGACWG
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C T G A C T G A T G C A G T C A G C T A G T C A G T C A G C T A C T G A C T G C G T A A C T G T C G A A G T C C G T A A C T G
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PLAG1/MA0163.1/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GGCCYNCTGGAGACWG
GGGGCCCAAGGGGG----
 A C G T A C G T A C T G A C T G A T G C A G T C A G C T A G T C A G T C A G C T A C T G A C T G C G T A A C T G T C G A A G T C C G T A A C T G
A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:GGCCYNCTGGAGACWG
-------CGGAGC---
 A C T G A C T G A T G C A G T C A G C T A G T C A G T C A G C T A C T G A C T G C G T A A C T G T C G A A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:8
Score:0.48
Offset:2
Orientation:forward strand
Alignment:GGCCYNCTGGAGACWG---
--CTACTTGGATACGGAAT
 A C T G A C T G A T G C A G T C A G C T A G T C A G T C A G C T A C T G A C T G C G T A A C T G T C G A A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.48
Offset:8
Orientation:reverse strand
Alignment:GGCCYNCTGGAGACWG
--------CCAGACAG
 A C T G A C T G A T G C A G T C A G C T A G T C A G T C A G C T A C T G A C T G C G T A A C T G T C G A A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:10
Score:0.48
Offset:0
Orientation:forward strand
Alignment:GGCCYNCTGGAGACWG
GGTCANYTGAGGWCA-
 A C T G A C T G A T G C A G T C A G C T A G T C A G T C A G C T A C T G A C T G C G T A A C T G T C G A A G T C C G T A A C T G
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T