Information for 7-GCTCGACTGC (Motif 12)

C T A G A T G C G C A T T G A C C A T G C T G A A T G C C G A T C T A G A G T C
Reverse Opposite:
T C A G G A T C G C T A A T C G G A C T G T A C A C T G C G T A A T C G G A T C
p-value:1e-10
log p-value:-2.388e+01
Information Content per bp:1.667
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.05%
Number of Background Sequences with motif492.6
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets48.2 +/- 24.1bp
Average Position of motif in Background50.4 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GCTCGACTGC
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T A C G T C T A G A T G C G C A T T G A C C A T G C T G A A T G C C G A T C T A G A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX5/MA0014.2/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GCTCGACTGC----
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A C G T A C G T A C G T C T A G A T G C G C A T T G A C C A T G C T G A A T G C C G A T C T A G A G T C A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GCTCGACTGC
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T G C G C A T T G A C C A T G C T G A A T G C C G A T C T A G A G T C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PB0149.1_Myb_2/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCTCGACTGC-----
CGACCAACTGCCATGC
 A C G T C T A G A T G C G C A T T G A C C A T G C T G A A T G C C G A T C T A G A G T C A C G T A C G T A C G T A C G T A C G T
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCTCGACTGC
VBSYGTCTGG
 C T A G A T G C G C A T T G A C C A T G C T G A A T G C C G A T C T A G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCTCGACTGC------
AATCGCACTGCATTCCG
 A C G T C T A G A T G C G C A T T G A C C A T G C T G A A T G C C G A T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCTCGACTGC--
GGGGCTYGKCTGGGA
 A C G T A C G T A C G T C T A G A T G C G C A T T G A C C A T G C T G A A T G C C G A T C T A G A G T C A C G T A C G T
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCTCGACTGC--
--CCAACTGCCA
 C T A G A T G C G C A T T G A C C A T G C T G A A T G C C G A T C T A G A G T C A C G T A C G T
A C G T A C G T A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCTCGACTGC-
-BTBRAGTGSN
 C T A G A T G C G C A T T G A C C A T G C T G A A T G C C G A T C T A G A G T C A C G T
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

PB0150.1_Mybl1_2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCTCGACTGC----
CGACCAACTGCCGTG
 A C G T C T A G A T G C G C A T T G A C C A T G C T G A A T G C C G A T C T A G A G T C A C G T A C G T A C G T A C G T
A G T C A T C G T G C A G A T C G A T C G C T A G T C A A G T C A G C T A C T G G A T C G T A C C T A G G C A T A C T G