Information for 9-GAGAATTAAMATT (Motif 4)

A T C G C G T A A C T G G T C A C G T A C G A T A C G T C G T A C G T A G T C A G C T A A C G T C G A T
Reverse Opposite:
C G T A C G T A C A G T A C G T A C G T G C A T G T C A C G T A A C G T A C G T A G T C C G A T A T G C
p-value:1e-12
log p-value:-2.944e+01
Information Content per bp:1.761
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets54.8 +/- 24.1bp
Average Position of motif in Background53.8 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3b/MA0601.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAGAATTAAMATT
-NTAATTAATAT-
 A T C G C G T A A C T G G T C A C G T A C G A T A C G T C G T A C G T A G T C A G C T A A C G T C G A T
A C G T A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:2
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GAGAATTAAMATT
----ATTAAA---
 A T C G C G T A A C T G G T C A C G T A C G A T A C G T C G T A C G T A G T C A G C T A A C G T C G A T
A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T

PB0064.1_Sox14_1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAGAATTAAMATT---
GCTAATTATAATTATC
 A T C G C G T A A C T G G T C A C G T A C G A T A C G T C G T A C G T A G T C A G C T A A C G T C G A T A C G T A C G T A C G T
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

PB0079.1_Sry_1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAGAATTAAMATT---
TATAATTATAATATTC
 A T C G C G T A A C T G G T C A C G T A C G A T A C G T C G T A C G T A G T C A G C T A A C G T C G A T A C G T A C G T A C G T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GAGAATTAAMATT
-BTVATTWGCATA
 A T C G C G T A A C T G G T C A C G T A C G A T A C G T C G T A C G T A G T C A G C T A A C G T C G A T
A C G T A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GAGAATTAAMATT
----ATTTGCATA
 A T C G C G T A A C T G G T C A C G T A C G A T A C G T C G T A C G T A G T C A G C T A A C G T C G A T
A C G T A C G T A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

POU3F1/MA0786.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAGAATTAAMATT-
--TAATTTGCATAA
 A T C G C G T A A C T G G T C A C G T A C G A T A C G T C G T A C G T A G T C A G C T A A C G T C G A T A C G T
A C G T A C G T C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGAATTAAMATT--
AGAGCCATAAAATTCG
 A C G T A T C G C G T A A C T G G T C A C G T A C G A T A C G T C G T A C G T A G T C A G C T A A C G T C G A T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

PH0137.1_Pitx1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GAGAATTAAMATT
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T A C G T A T C G C G T A A C T G G T C A C G T A C G A T A C G T C G T A C G T A G T C A G C T A A C G T C G A T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

LIN54/MA0619.1/Jaspar

Match Rank:10
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GAGAATTAAMATT
---NATTCAAAT-
 A T C G C G T A A C T G G T C A C G T A C G A T A C G T C G T A C G T A G T C A G C T A A C G T C G A T
A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T