Information for 9-CARCTAAATG (Motif 7)

G T A C C G T A C T G A T A G C A G C T C G T A C G T A C T G A A C G T C T A G
Reverse Opposite:
A G T C C G T A A G C T A C G T C G A T C T G A A T C G G A C T C G A T A C T G
p-value:1e-8
log p-value:-2.032e+01
Information Content per bp:1.802
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif166.2
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets46.9 +/- 27.8bp
Average Position of motif in Background45.7 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARHL2/MA0635.1/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CARCTAAATG--
--GCTAAACGGT
 G T A C C G T A C T G A T A G C A G C T C G T A C G T A C T G A A C G T C T A G A C G T A C G T
A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

Barhl1/MA0877.1/Jaspar

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CARCTAAATG--
--GCTAATTGCT
 G T A C C G T A C T G A T A G C A G C T C G T A C G T A C T G A A C G T C T A G A C G T A C G T
A C G T A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CARCTAAATG-
---TTAAGTGC
 G T A C C G T A C T G A T A G C A G C T C G T A C G T A C T G A A C G T C T A G A C G T
A C G T A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CARCTAAATG-
---CTAATKGV
 G T A C C G T A C T G A T A G C A G C T C G T A C G T A C T G A A C G T C T A G A C G T
A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

NKX3-2/MA0122.2/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CARCTAAATG--
---TTAAGTGGN
 G T A C C G T A C T G A T A G C A G C T C G T A C G T A C T G A A C G T C T A G A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CARCTAAATG--
---TTAAGTGGT
 G T A C C G T A C T G A T A G C A G C T C G T A C G T A C T G A A C G T C T A G A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

Msx3/MA0709.1/Jaspar

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CARCTAAATG-
---NTAATTGN
 G T A C C G T A C T G A T A G C A G C T C G T A C G T A C T G A A C G T C T A G A C G T
A C G T A C G T A C G T A G C T G C A T C T G A C G T A A C G T A G C T C T A G A T C G

GBX1/MA0889.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CARCTAAATG--
--GCTAATTAGN
 G T A C C G T A C T G A T A G C A G C T C G T A C G T A C T G A A C G T C T A G A C G T A C G T
A C G T A C G T T C A G A T G C C G A T C T G A C T G A A C G T A G C T C T G A T A C G A G C T

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CARCTAAATG-
---NTAATTGG
 G T A C C G T A C T G A T A G C A G C T C G T A C G T A C T G A A C G T C T A G A C G T
A C G T A C G T A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G

GBX2/MA0890.1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CARCTAAATG--
--NNTAATTGNN
 G T A C C G T A C T G A T A G C A G C T C G T A C G T A C T G A A C G T C T A G A C G T A C G T
A C G T A C G T T A C G A G T C C G A T T G C A T G C A A C G T A G C T C T A G T A C G A G C T