Information for 22-RTGSWYRTCACTY (Motif 18)

T C G A A C G T A T C G A T C G C G T A A G C T C T G A A C G T A G T C C G T A A G T C A C G T A G C T
Reverse Opposite:
C T G A C G T A A C T G A C G T A C T G C G T A A G C T C T G A C G A T A T G C A T G C C G T A A G C T
p-value:1e-9
log p-value:-2.154e+01
Information Content per bp:1.830
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.8 +/- 32.0bp
Average Position of motif in Background20.9 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:RTGSWYRTCACTY--
-----MRSCACTYAA
 T C G A A C G T A T C G A T C G C G T A A G C T C T G A A C G T A G T C C G T A A G T C A C G T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.62
Offset:5
Orientation:forward strand
Alignment:RTGSWYRTCACTY
-----AGTCACGC
 T C G A A C G T A T C G A T C G C G T A A G C T C T G A A C G T A G T C C G T A A G T C A C G T A G C T
A C G T A C G T A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:RTGSWYRTCACTY-
--GSCTGTCACTCA
 T C G A A C G T A T C G A T C G C G T A A G C T C T G A A C G T A G T C C G T A A G T C A C G T A G C T A C G T
A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

PH0017.1_Cux1_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--RTGSWYRTCACTY
TAGTGATCATCATTA
 A C G T A C G T T C G A A C G T A T C G A T C G C G T A A G C T C T G A A C G T A G T C C G T A A G T C A C G T A G C T
G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A

PB0059.1_Six6_1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--RTGSWYRTCACTY--
AATAGGGTATCATATAT
 A C G T A C G T T C G A A C G T A T C G A T C G C G T A A G C T C T G A A C G T A G T C C G T A A G T C A C G T A G C T A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.58
Offset:6
Orientation:forward strand
Alignment:RTGSWYRTCACTY---
------ACCACTTGAA
 T C G A A C G T A T C G A T C G C G T A A G C T C T G A A C G T A G T C C G T A A G T C A C G T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--RTGSWYRTCACTY
GARTGGTCATCGCCC
 A C G T A C G T T C G A A C G T A T C G A T C G C G T A A G C T C T G A A C G T A G T C C G T A A G T C A C G T A G C T
T A C G C G T A T C A G G A C T C T A G A C T G C A G T T A G C T C G A A C G T G T A C C T A G A G T C A G T C G A T C

NKX3-2/MA0122.2/Jaspar

Match Rank:8
Score:0.58
Offset:6
Orientation:forward strand
Alignment:RTGSWYRTCACTY--
------ACCACTTAA
 T C G A A C G T A T C G A T C G C G T A A G C T C T G A A C G T A G T C C G T A A G T C A C G T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.58
Offset:6
Orientation:forward strand
Alignment:RTGSWYRTCACTY---
------RSCACTYRAG
 T C G A A C G T A T C G A T C G C G T A A G C T C T G A A C G T A G T C C G T A A G T C A C G T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

NKX2-8/MA0673.1/Jaspar

Match Rank:10
Score:0.58
Offset:7
Orientation:forward strand
Alignment:RTGSWYRTCACTY---
-------CCACTTGAA
 T C G A A C G T A T C G A T C G C G T A A G C T C T G A A C G T A G T C C G T A A G T C A C G T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A