Information for 12-GSCAAAGGGA (Motif 12)

C T A G A T G C A G T C T C G A T G C A C G T A C T A G T A C G T A C G C T G A
Reverse Opposite:
G A C T A T G C A T G C G A T C G C A T A C G T A G C T T C A G T A C G G A T C
p-value:1e-12
log p-value:-2.890e+01
Information Content per bp:1.639
Number of Target Sequences with motif88.0
Percentage of Target Sequences with motif10.64%
Number of Background Sequences with motif2118.3
Percentage of Background Sequences with motif4.53%
Average Position of motif in Targets51.3 +/- 26.0bp
Average Position of motif in Background49.7 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GSCAAAGGGA
RACAAWGG--
 C T A G A T G C A G T C T C G A T G C A C G T A C T A G T A C G T A C G C T G A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GSCAAAGGGA-
GTAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T C T A G A T G C A G T C T C G A T G C A C G T A C T A G T A C G T A C G C T G A A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GSCAAAGGGA
CGTGCCAAG----
 A C G T A C G T A C G T C T A G A T G C A G T C T C G A T G C A C G T A C T A G T A C G T A C G C T G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GSCAAAGGGA
AACAAAGG--
 C T A G A T G C A G T C T C G A T G C A C G T A C T A G T A C G T A C G C T G A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GSCAAAGGGA
AAAACAAAGG--
 A C G T A C G T C T A G A T G C A G T C T C G A T G C A C G T A C T A G T A C G T A C G C T G A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GSCAAAGGGA-
TAGGGCAAAGGTCA
 A C G T A C G T A C G T C T A G A T G C A G T C T C G A T G C A C G T A C T A G T A C G T A C G C T G A A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GSCAAAGGGA-
TGGGGCAAAGGTCA
 A C G T A C G T A C G T C T A G A T G C A G T C T C G A T G C A C G T A C T A G T A C G T A C G C T G A A C G T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GSCAAAGGGA
ACATCAAAGGNA
 A C G T A C G T C T A G A T G C A G T C T C G A T G C A C G T A C T A G T A C G T A C G C T G A
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GSCAAAGGGA
TGCCAA-----
 A C G T C T A G A T G C A G T C T C G A T G C A C G T A C T A G T A C G T A C G C T G A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GSCAAAGGGA---
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T C T A G A T G C A G T C T C G A T G C A C G T A C T A G T A C G T A C G C T G A A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A