Information for 6-GCTCATTATG (Motif 6)

A C T G A G T C G C A T T G A C G T C A G A C T G C A T G T C A C A G T A C T G
Reverse Opposite:
T G A C G T C A C A G T C G T A C T G A C A G T A C T G C G T A T C A G T G A C
p-value:1e-16
log p-value:-3.912e+01
Information Content per bp:1.537
Number of Target Sequences with motif139.0
Percentage of Target Sequences with motif17.31%
Number of Background Sequences with motif3807.7
Percentage of Background Sequences with motif8.01%
Average Position of motif in Targets51.0 +/- 26.1bp
Average Position of motif in Background49.7 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU6F2/MA0793.1/Jaspar

Match Rank:1
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-GCTCATTATG
AGCTCATTAT-
 A C G T A C T G A G T C G C A T T G A C G T C A G A C T G C A T G T C A C A G T A C T G
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:2
Score:0.88
Offset:-4
Orientation:reverse strand
Alignment:----GCTCATTATG---
GCAACCTCATTATNNNN
 A C G T A C G T A C G T A C G T A C T G A G T C G C A T T G A C G T C A G A C T G C A T G T C A C A G T A C T G A C G T A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:3
Score:0.87
Offset:-4
Orientation:reverse strand
Alignment:----GCTCATTATG---
NNNACCTCATTATCNTN
 A C G T A C G T A C G T A C G T A C T G A G T C G C A T T G A C G T C A G A C T G C A T G T C A C A G T A C T G A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

NOTO/MA0710.1/Jaspar

Match Rank:4
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GCTCATTATG
GCTAATTAGC
 A C T G A G T C G C A T T G A C G T C A G A C T G C A T G T C A C A G T A C T G
T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:5
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GCTCATTATG
NCTAATTA--
 A C T G A G T C G C A T T G A C G T C A G A C T G C A T G T C A C A G T A C T G
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T

EMX1/MA0612.1/Jaspar

Match Rank:6
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GCTCATTATG
NNTAATTAGN
 A C T G A G T C G C A T T G A C G T C A G A C T G C A T G T C A C A G T A C T G
T C A G A T C G G A C T G T C A G C T A G C A T A G C T C T G A C T A G A C T G

EVX2/MA0888.1/Jaspar

Match Rank:7
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GCTCATTATG
GGTAATTAGC
 A C T G A G T C G C A T T G A C G T C A G A C T G C A T G T C A C A G T A C T G
T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C

EVX1/MA0887.1/Jaspar

Match Rank:8
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GCTCATTATG
GGTAATTAGC
 A C T G A G T C G C A T T G A C G T C A G A C T G C A T G T C A C A G T A C T G
T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C

MEOX1/MA0661.1/Jaspar

Match Rank:9
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCTCATTATG
GCTAATTAAC
 A C T G A G T C G C A T T G A C G T C A G A C T G C A T G T C A C A G T A C T G
T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C

LHX2/MA0700.1/Jaspar

Match Rank:10
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCTCATTATG
ACTAATTAAC
 A C T G A G T C G C A T T G A C G T C A G A C T G C A T G T C A C A G T A C T G
T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C