Information for 5-HKGGGAATTCCCY (Motif 4)

G T A C C A T G A C T G A C T G C T A G C T G A T G C A C A G T A C G T G A T C G T A C A G T C G A C T
Reverse Opposite:
C T G A A C T G A C T G C T A G C G T A G T C A A C G T A G C T G A T C G T A C A G T C G T A C C A T G
p-value:1e-20
log p-value:-4.805e+01
Information Content per bp:1.686
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.62%
Number of Background Sequences with motif55.2
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets40.5 +/- 18.9bp
Average Position of motif in Background48.1 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:HKGGGAATTCCCY-
--GGGAAATCCCCN
 G T A C C A T G A C T G A C T G C T A G C T G A T G C A C A G T A C G T G A T C G T A C A G T C G A C T A C G T
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.83
Offset:2
Orientation:forward strand
Alignment:HKGGGAATTCCCY
--GGAAATTCCC-
 G T A C C A T G A C T G A C T G C T A G C T G A T G C A C A G T A C G T G A T C G T A C A G T C G A C T
A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.81
Offset:2
Orientation:forward strand
Alignment:HKGGGAATTCCCY
--GGGGATTTCC-
 G T A C C A T G A C T G A C T G C T A G C T G A T G C A C A G T A C G T G A T C G T A C A G T C G A C T
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.81
Offset:2
Orientation:forward strand
Alignment:HKGGGAATTCCCY
--GGGAATTTCC-
 G T A C C A T G A C T G A C T G C T A G C T G A T G C A C A G T A C G T G A T C G T A C A G T C G A C T
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.79
Offset:1
Orientation:forward strand
Alignment:HKGGGAATTCCCY-
-AGGGGATTCCCCT
 G T A C C A T G A C T G A C T G C T A G C T G A T G C A C A G T A C G T G A T C G T A C A G T C G A C T A C G T
A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:HKGGGAATTCCCY-
--GGGGATTCCCCC
 G T A C C A T G A C T G A C T G C T A G C T G A T G C A C A G T A C G T G A T C G T A C A G T C G A C T A C G T
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:HKGGGAATTCCCY
---GGAAANCCCC
 G T A C C A T G A C T G A C T G C T A G C T G A T G C A C A G T A C G T G A T C G T A C A G T C G A C T
A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:HKGGGAATTCCCY-
-AGGGGATTCCCCT
 G T A C C A T G A C T G A C T G C T A G C T G A T G C A C A G T A C G T G A T C G T A C A G T C G A C T A C G T
A C G T T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:HKGGGAATTCCCY
TGGGGA-------
 G T A C C A T G A C T G A C T G C T A G C T G A T G C A C A G T A C G T G A T C G T A C A G T C G A C T
A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---HKGGGAATTCCCY
TTAAGAGGAAGTTA--
 A C G T A C G T A C G T G T A C C A T G A C T G A C T G C T A G C T G A T G C A C A G T A C G T G A T C G T A C A G T C G A C T
A G C T C G A T C G T A C G T A T C A G T C G A C T A G A C T G C G T A C G T A T A C G G A C T C G A T G T A C A C G T A C G T