Information for 10-TTCACTAGGTCAG (Motif 13)

A C G T A G C T G T A C C G T A G T A C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C T G
Reverse Opposite:
A G T C C G A T A C T G C G T A A G T C A G T C A C G T G T C A A C T G A C G T A C T G C T G A C G T A
p-value:1e-10
log p-value:-2.522e+01
Information Content per bp:1.929
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.0 +/- 30.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TTCACTAGGTCAG
TATAAGTAGGTCAA
 A C G T A C G T A G C T G T A C C G T A G T A C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C T G
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.73
Offset:2
Orientation:forward strand
Alignment:TTCACTAGGTCAG
--AAYTAGGTCA-
 A C G T A G C T G T A C C G T A G T A C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C T G
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TTCACTAGGTCAG
--ATCAAGGTCA-
 A C G T A G C T G T A C C G T A G T A C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C T G
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.67
Offset:6
Orientation:forward strand
Alignment:TTCACTAGGTCAG
------AGGTCA-
 A C G T A G C T G T A C C G T A G T A C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TTCACTAGGTCAG
GTAGGTCACTGGGTCA-
 A C G T A C G T A C G T A C G T A C G T A G C T G T A C C G T A G T A C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C T G
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TTCACTAGGTCAG
GAGGTCAAAAGGTCA-
 A C G T A C G T A C G T A C G T A G C T G T A C C G T A G T A C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C T G
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TTCACTAGGTCAG
----TRAGGTCA-
 A C G T A G C T G T A C C G T A G T A C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTCACTAGGTCAG
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T A C G T A C G T A G C T G T A C C G T A G T A C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C T G
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

Rarg/MA0859.1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TTCACTAGGTCAG
AAGGTCAAAAGGTCAA
 A C G T A C G T A C G T A C G T A G C T G T A C C G T A G T A C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C T G
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TTCACTAGGTCAG
---TCAAGGTCAN
 A C G T A G C T G T A C C G T A G T A C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C