Information for 5-GGAAATCCCC (Motif 4)

C A T G A T C G C T G A C T G A C G T A A G C T A T G C T G A C A G T C G A T C
Reverse Opposite:
C T A G T C A G A C T G T A C G T C G A G C A T A G C T G A C T T A G C G T A C
p-value:1e-25
log p-value:-5.865e+01
Information Content per bp:1.635
Number of Target Sequences with motif149.0
Percentage of Target Sequences with motif19.13%
Number of Background Sequences with motif3494.4
Percentage of Background Sequences with motif7.43%
Average Position of motif in Targets51.1 +/- 26.8bp
Average Position of motif in Background49.9 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:GGAAATCCCC
GGAAATCCCC
 C A T G A T C G C T G A C T G A C G T A A G C T A T G C T G A C A G T C G A T C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:GGAAATCCCC
GGAAATTCCC
 C A T G A T C G C T G A C T G A C G T A A G C T A T G C T G A C A G T C G A T C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-GGAAATCCCC-
GGGAAATCCCCN
 A C G T C A T G A T C G C T G A C T G A C G T A A G C T A T G C T G A C A G T C G A T C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:GGAAATCCCC
GGAAANCCCC
 C A T G A T C G C T G A C T G A C G T A A G C T A T G C T G A C A G T C G A T C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GGAAATCCCC
GGAAATTCCC
 C A T G A T C G C T G A C T G A C G T A A G C T A T G C T G A C A G T C G A T C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--GGAAATCCCC
GGGGGAATCCCC
 A C G T A C G T C A T G A T C G C T G A C T G A C G T A A G C T A T G C T G A C A G T C G A T C
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--GGAAATCCCC-
AGGGGAATCCCCT
 A C G T A C G T C A T G A T C G C T G A C T G A C G T A A G C T A T G C T G A C A G T C G A T C A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GGAAATCCCC-
AGGGGAATCCCCT
 A C G T A C G T C A T G A T C G C T G A C T G A C G T A A G C T A T G C T G A C A G T C G A T C A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:9
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GGAAATCCCC--
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T A C G T C A T G A T C G C T G A C T G A C G T A A G C T A T G C T G A C A G T C G A T C A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GGAAATCCCC
NNTGGAAANN---
 A C G T A C G T A C G T C A T G A T C G C T G A C T G A C G T A A G C T A T G C T G A C A G T C G A T C
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T A C G T