Information for 10-CTGAAAATCA (Motif 11)

A G T C A C G T A C T G C G T A C G T A C G T A C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A C G T A C G T A C G T A G T C C G T A A C T G
p-value:1e-6
log p-value:-1.384e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.5 +/- 25.9bp
Average Position of motif in Background73.0 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1/MA0038.1/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CTGAAAATCA---
---CAAATCACTG
 A G T C A C G T A C T G C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTGAAAATCA-
NCTGTCAATCAN
 A C G T A G T C A C G T A C T G C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGAAAATCA-
SCTGTCAVTCAV
 A C G T A G T C A C G T A C T G C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PH0037.1_Hdx/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTGAAAATCA-----
AAGGCGAAATCATCGCA
 A C G T A C G T A G T C A C G T A C T G C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTGAAAATCA
GSCTGTCACTCA
 A C G T A C G T A G T C A C G T A C T G C G T A C G T A C G T A C G T A A C G T A G T C C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTGAAAATCA-
GGCCATAAATCAC
 A C G T A C G T A G T C A C G T A C T G C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

PH0017.1_Cux1_2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTGAAAATCA---
TAATGATGATCACTA
 A C G T A C G T A G T C A C G T A C T G C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T
C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A

ONECUT3/MA0757.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTGAAAATCA-----
-AAAAAATCAATAAT
 A G T C A C G T A C T G C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTGAAAATCA
GGCCATAAATCA
 A C G T A C G T A G T C A C G T A C T G C G T A C G T A C G T A C G T A A C G T A G T C C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTGAAAATCA-
---CCAATCAA
 A G T C A C G T A C T G C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A