Information for 5-CCCCSTGTGGCCA (Motif 3)

A G T C A G T C A G T C G T A C A T C G C A G T A C T G A C G T A C T G T A C G A G T C A G T C C T G A
Reverse Opposite:
G A C T A C T G A C T G A G T C G T A C G T C A G T A C G C T A T A G C C A T G T A C G T A C G C T A G
p-value:1e-25
log p-value:-5.760e+01
Information Content per bp:1.776
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.44%
Number of Background Sequences with motif32.2
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets50.7 +/- 20.1bp
Average Position of motif in Background55.2 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PLAG1/MA0163.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCCCSTGTGGCCA-
CCCCCTTGGGCCCC
 A G T C A G T C A G T C G T A C A T C G C A G T A C T G A C G T A C T G T A C G A G T C A G T C C T G A A C G T
A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------CCCCSTGTGGCCA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C G T A C A T C G C A G T A C T G A C G T A C T G T A C G A G T C A G T C C T G A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------CCCCSTGTGGCCA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C G T A C A T C G C A G T A C T G A C G T A C T G T A C G A G T C A G T C C T G A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCCCSTGTGGCCA
TCCCCTGGGGAC-
 A G T C A G T C A G T C G T A C A T C G C A G T A C T G A C G T A C T G T A C G A G T C A G T C C T G A
A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C A C G T

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------CCCCSTGTGGCCA
TGCAGTTCCNNNNNTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C G T A C A T C G C A G T A C T G A C G T A C T G T A C G A G T C A G T C C T G A
C G A T T A C G G A T C G C T A T C A G G A C T C G A T G T A C G A T C G T C A T C G A T G A C C G T A C T A G G A C T C T A G C T A G G T A C A G T C C G T A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.57
Offset:-9
Orientation:forward strand
Alignment:---------CCCCSTGTGGCCA
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C G T A C A T C G C A G T A C T G A C G T A C T G T A C G A G T C A G T C C T G A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCCCSTGTGGCCA-----
--GGGTGTGCCCAAAAGG
 A G T C A G T C A G T C G T A C A T C G C A G T A C T G A C G T A C T G T A C G A G T C A G T C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCCCSTGTGGCCA
TGWCCTCARNTGACC-
 A C G T A C G T A C G T A G T C A G T C A G T C G T A C A T C G C A G T A C T G A C G T A C T G T A C G A G T C A G T C C T G A
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T

GLI2/MA0734.1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCCCSTGTGGCCA-
--CAGTGTGGTCGC
 A G T C A G T C A G T C G T A C A T C G C A G T A C T G A C G T A C T G T A C G A G T C A G T C C T G A A C G T
A C G T A C G T G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCCCSTGTGGCCA-
--NNHTGTGGTTWN
 A G T C A G T C A G T C G T A C A T C G C A G T A C T G A C G T A C T G T A C G A G T C A G T C C T G A A C G T
A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G