Information for 8-AGAGCGCAGC (Motif 9)

G T C A A C T G T G C A A T C G G T A C C T A G A T G C G T C A T A C G A G T C
Reverse Opposite:
C T A G A T G C A C G T A T C G G A T C C A T G T A G C A C G T A G T C A C G T
p-value:1e-11
log p-value:-2.721e+01
Information Content per bp:1.741
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif5.79%
Number of Background Sequences with motif727.8
Percentage of Background Sequences with motif1.80%
Average Position of motif in Targets52.6 +/- 26.8bp
Average Position of motif in Background50.4 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGAGCGCAGC------
-GAGCACAGCAGGACA
 G T C A A C T G T G C A A T C G G T A C C T A G A T G C G T C A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AGAGCGCAGC
----CACAGN
 G T C A A C T G T G C A A T C G G T A C C T A G A T G C G T C A T A C G A G T C
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

NHLH1/MA0048.2/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AGAGCGCAGC----
----CGCAGCTGCG
 G T C A A C T G T G C A A T C G G T A C C T A G A T G C G T C A T A C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AGAGCGCAGC-
------CAGCC
 G T C A A C T G T G C A A T C G G T A C C T A G A T G C G T C A T A C G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

PB0126.1_Gata5_2/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----AGAGCGCAGC--
GACAGAGATATCAGTGT
 A C G T A C G T A C G T A C G T A C G T G T C A A C T G T G C A A T C G G T A C C T A G A T G C G T C A T A C G A G T C A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGAGCGCAGC-------
NNNNAGCAGCTGCTGAN
 G T C A A C T G T G C A A T C G G T A C C T A G A T G C G T C A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGAGCGCAGC------
-CCACACAGCAGGAGA
 G T C A A C T G T G C A A T C G G T A C C T A G A T G C G T C A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGAGCGCAGC---
---DCTCAGCAGG
 G T C A A C T G T G C A A T C G G T A C C T A G A T G C G T C A T A C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

POL002.1_INR/Jaspar

Match Rank:9
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AGAGCGCAGC---
-----TCAGTCTT
 G T C A A C T G T G C A A T C G G T A C C T A G A T G C G T C A T A C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGAGCGCAGC
CAAAGGTCAG-
 A C G T G T C A A C T G T G C A A T C G G T A C C T A G A T G C G T C A T A C G A G T C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T