Information for 5-SCWGCCMYWCTGWGGC (Motif 7)

A T C G A T G C C G A T A C T G A G T C A G T C G T A C A G T C C G A T A G T C A C G T A C T G C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G A T A G T C C G T A A C T G C G T A C T A G C A T G A C T G A C T G A G T C C G T A A T C G A T G C
p-value:1e-12
log p-value:-2.969e+01
Information Content per bp:1.852
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets27.5 +/- 14.5bp
Average Position of motif in Background35.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.56
Offset:5
Orientation:forward strand
Alignment:SCWGCCMYWCTGWGGC
-----CCTGCTGAGH-
 A T C G A T G C C G A T A C T G A G T C A G T C G T A C A G T C C G A T A G T C A C G T A C T G C G T A A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--SCWGCCMYWCTGWGGC--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A T C G A T G C C G A T A C T G A G T C A G T C G T A C A G T C C G A T A G T C A C G T A C T G C G T A A C T G A C T G A G T C A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.54
Offset:7
Orientation:forward strand
Alignment:SCWGCCMYWCTGWGGC--
-------GTCTGTGGTTT
 A T C G A T G C C G A T A C T G A G T C A G T C G T A C A G T C C G A T A G T C A C G T A C T G C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----SCWGCCMYWCTGWGGC
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A T C G A T G C C G A T A C T G A G T C A G T C G T A C A G T C C G A T A G T C A C G T A C T G C G T A A C T G A C T G A G T C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:SCWGCCMYWCTGWGGC-
--NNTCCTGCTGTGNNN
 A T C G A T G C C G A T A C T G A G T C A G T C G T A C A G T C C G A T A G T C A C G T A C T G C G T A A C T G A C T G A G T C A C G T
A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----SCWGCCMYWCTGWGGC
TACGCCCCGCCACTCTG----
 A C G T A C G T A C G T A C G T A C G T A T C G A T G C C G A T A C T G A G T C A G T C G T A C A G T C C G A T A G T C A C G T A C T G C G T A A C T G A C T G A G T C
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:SCWGCCMYWCTGWGGC
GCNGCCATCTTG----
 A T C G A T G C C G A T A C T G A G T C A G T C G T A C A G T C C G A T A G T C A C G T A C T G C G T A A C T G A C T G A G T C
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:SCWGCCMYWCTGWGGC
--CCCCCTGCTGTG--
 A T C G A T G C C G A T A C T G A G T C A G T C G T A C A G T C C G A T A G T C A C G T A C T G C G T A A C T G A C T G A G T C
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-SCWGCCMYWCTGWGGC--
TAGCGCCCCCTGGTGGCCA
 A C G T A T C G A T G C C G A T A C T G A G T C A G T C G T A C A G T C C G A T A G T C A C G T A C T G C G T A A C T G A C T G A G T C A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:SCWGCCMYWCTGWGGC-
--TCNCCTGCTGNGNNN
 A T C G A T G C C G A T A C T G A G T C A G T C G T A C A G T C C G A T A G T C A C G T A C T G C G T A A C T G A C T G A G T C A C G T
A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G