Information for 6-CATAGTACCA (Motif 4)

A T G C C T G A A C G T G T C A A C T G A C G T C T G A G A T C A G T C C G T A
Reverse Opposite:
A C G T A C T G C T A G A G C T G T C A T G A C A C G T T G C A A G C T A T C G
p-value:1e-13
log p-value:-3.161e+01
Information Content per bp:1.701
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.20%
Number of Background Sequences with motif77.4
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets51.7 +/- 25.6bp
Average Position of motif in Background47.5 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CATAGTACCA---
----ATGCCAACC
 A T G C C T G A A C G T G T C A A C T G A C G T C T G A G A T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CATAGTACCA---
---GGTGCCAAGT
 A T G C C T G A A C G T G T C A A C T G A C G T C T G A G A T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CATAGTACCA--
---CGTGCCAAG
 A T G C C T G A A C G T G T C A A C T G A C G T C T G A G A T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:CATAGTACCA-
-----TGCCAA
 A T G C C T G A A C G T G T C A A C T G A C G T C T G A G A T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CATAGTACCA--
----TTGCCAAG
 A T G C C T G A A C G T G T C A A C T G A C G T C T G A G A T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CATAGTACCA
TTGGCATGGTGCCA
 A C G T A C G T A C G T A C G T A T G C C T G A A C G T G T C A A C T G A C G T C T G A G A T C A G T C C G T A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CATAGTACCA-------
-ACTATGCCAACCTACC
 A T G C C T G A A C G T G T C A A C T G A C G T C T G A G A T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CATAGTACCA---
-----TGTCANYT
 A T G C C T G A A C G T G T C A A C T G A C G T C T G A G A T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CATAGTACCA--
TTGGCANNNTGCCAAG
 A C G T A C G T A C G T A C G T A T G C C T G A A C G T G T C A A C T G A C G T C T G A G A T C A G T C C G T A A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

DMRT3/MA0610.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CATAGTACCA--
-AATGTATCAAT
 A T G C C T G A A C G T G T C A A C T G A C G T C T G A G A T C A G T C C G T A A C G T A C G T
A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T