Information for 9-AGGACAGTAG (Motif 12)

C G T A C T A G T C A G C G T A A T G C C G T A A C T G G C A T C T G A C T A G
Reverse Opposite:
A G T C A G C T C G T A A G T C A C G T A T C G A C G T A G T C A G T C A C G T
p-value:1e-9
log p-value:-2.124e+01
Information Content per bp:1.859
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.09%
Number of Background Sequences with motif126.3
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets48.8 +/- 28.7bp
Average Position of motif in Background47.1 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)-1.5
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0051.1_Osr2_1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGGACAGTAG-----
ATGTACAGTAGCAAAG
 A C G T C G T A C T A G T C A G C G T A A T G C C G T A A C T G G C A T C T G A C T A G A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

PB0050.1_Osr1_1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGGACAGTAG-----
ATTTACAGTAGCAAAA
 A C G T C G T A C T A G T C A G C G T A A T G C C G T A A C T G G C A T C T G A C T A G A C G T A C G T A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGGACAGTAG
CCAGGAACAG---
 A C G T A C G T A C G T C G T A C T A G T C A G C G T A A T G C C G T A A C T G G C A T C T G A C T A G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGACAGTAG
TRAGGTCA----
 A C G T A C G T C G T A C T A G T C A G C G T A A T G C C G T A A C T G G C A T C T G A C T A G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGACAGTAG
--CACAGN--
 C G T A C T A G T C A G C G T A A T G C C G T A A C T G G C A T C T G A C T A G
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

PB0047.1_Myf6_1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGACAGTAG----
GAAGAACAGGTGTCCG
 A C G T A C G T C G T A C T A G T C A G C G T A A T G C C G T A A C T G G C A T C T G A C T A G A C G T A C G T A C G T A C G T
T C A G T C G A C T G A A T C G T C G A C T G A A G T C C G T A A T C G A C T G G A C T A C T G A C G T A G T C G A T C A C T G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGGACAGTAG
CAAAGGTCAG---
 A C G T A C G T A C G T C G T A C T A G T C A G C G T A A T G C C G T A A C T G G C A T C T G A C T A G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGACAGTAG
AAGGTCAC---
 A C G T C G T A C T A G T C A G C G T A A T G C C G T A A C T G G C A T C T G A C T A G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGGACAGTAG
AAAACAATGG
 C G T A C T A G T C A G C G T A A T G C C G T A A C T G G C A T C T G A C T A G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGGACAGTAG-
-GAACAATGGN
 C G T A C T A G T C A G C G T A A T G C C G T A A C T G G C A T C T G A C T A G A C G T
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G