Information for 11-GTCGSKSTGTCTG (Motif 11)

A C T G A C G T A G T C A C T G A T C G A C G T A T C G A C G T A C T G A C G T A G T C A C G T A C T G
Reverse Opposite:
A G T C G T C A A C T G G T C A A G T C C G T A T A G C T G A C A T G C A G T C A C T G C G T A A G T C
p-value:1e-10
log p-value:-2.304e+01
Information Content per bp:1.886
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.1 +/- 21.6bp
Average Position of motif in Background57.7 +/- 40.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.69
Offset:4
Orientation:forward strand
Alignment:GTCGSKSTGTCTG-
----VBSYGTCTGG
 A C T G A C G T A G T C A C T G A T C G A C G T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.69
Offset:6
Orientation:forward strand
Alignment:GTCGSKSTGTCTG-
------CTGTCTGG
 A C T G A C G T A G T C A C T G A T C G A C G T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.64
Offset:6
Orientation:forward strand
Alignment:GTCGSKSTGTCTG-
------TWGTCTGV
 A C T G A C G T A G T C A C T G A T C G A C G T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GTCGSKSTGTCTG------
--NNTNNTGTCTGGNNTNG
 A C T G A C G T A G T C A C T G A T C G A C G T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTCGSKSTGTCTG-
GTCACGCTCNCTGA
 A C T G A C G T A G T C A C T G A T C G A C G T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C G T
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

PB0151.1_Myf6_2/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GTCGSKSTGTCTG-----
---GGNGCGNCTGTTNNN
 A C T G A C G T A G T C A C T G A T C G A C G T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTCGSKSTGTCTG
GGGGGTGTGTCC-
 A C T G A C G T A G T C A C T G A T C G A C G T A T C G A C G T A C T G A C G T A G T C A C G T A C T G
T C A G C A T G C A T G A C T G A C T G A G C T A C T G A C G T A C T G C A G T A T G C A G T C A C G T

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTCGSKSTGTCTG
RGTGGGYGTGGC--
 A C G T A C T G A C G T A G T C A C T G A T C G A C G T A T C G A C G T A C T G A C G T A G T C A C G T A C T G
C T G A T C A G C A G T C T A G A T C G A C T G G A T C C A T G A C G T C A T G A C T G A G T C A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GTCGSKSTGTCTG------
-------TGTCTGDCACCT
 A C T G A C G T A G T C A C T G A T C G A C G T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GTCGSKSTGTCTG------
------CTGTCTGTCACCT
 A C T G A C G T A G T C A C T G A T C G A C G T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T