Information for 4-ATAGGTGGCA (Motif 3)

C T G A A C G T C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A
Reverse Opposite:
C G A T A C T G G T A C A G T C G T C A T A G C A G T C G C A T C G T A G A C T
p-value:1e-16
log p-value:-3.829e+01
Information Content per bp:1.772
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif2.96%
Number of Background Sequences with motif138.6
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets44.6 +/- 18.7bp
Average Position of motif in Background51.0 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:ATAGGTGGCA-
--GGTTGGCAT
 C T G A A C G T C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

PH0164.1_Six4/Jaspar

Match Rank:2
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--ATAGGTGGCA-----
TNNNNGGTGTCATNTNT
 A C G T A C G T C T G A A C G T C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.74
Offset:2
Orientation:forward strand
Alignment:ATAGGTGGCA
--AGGTGTCA
 C T G A A C G T C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A
A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:ATAGGTGGCA
--ARNTGACA
 C T G A A C G T C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A
A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ATAGGTGGCA----
NGTAGGTTGGCATNNN
 A C G T A C G T C T G A A C G T C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:ATAGGTGGCA-
--NGTGGGCAT
 C T G A A C G T C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--ATAGGTGGCA-----
GGCGAGGGGTCAAGGGC
 A C G T A C G T C T G A A C G T C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ATAGGTGGCA--
--VGCTGWCAVB
 C T G A A C G T C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:ATAGGTGGCA-
---CTTGGCAA
 C T G A A C G T C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:ATAGGTGGCA-
---RHTGWCAR
 C T G A A C G T C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A