Information for 7-TCAAATATTT (Motif 9)

C A G T T A G C C G T A G C T A C G T A C A G T C G T A C G A T A C G T C G A T
Reverse Opposite:
C G T A C G T A C G T A G C A T G T C A A C G T C G A T A C G T A T C G G T C A
p-value:1e-9
log p-value:-2.220e+01
Information Content per bp:1.827
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.51%
Number of Background Sequences with motif204.7
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets42.4 +/- 27.1bp
Average Position of motif in Background51.1 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TCAAATATTT-----
-CTAATATTGCTAAA
 C A G T T A G C C G T A G C T A C G T A C A G T C G T A C G A T A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TCAAATATTT-----
-CTAATATTGCTAAA
 C A G T T A G C C G T A G C T A C G T A C A G T C G T A C G A T A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TCAAATATTT
---AATAATT
 C A G T T A G C C G T A G C T A C G T A C A G T C G T A C G A T A C G T C G A T
A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

FOXC1/MA0032.2/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TCAAATATTT-----
----ATATTTACATA
 C A G T T A G C C G T A G C T A C G T A C A G T C G T A C G A T A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TCAAATATTT-
GGTTAAACATTAA
 A C G T A C G T C A G T T A G C C G T A G C T A C G T A C A G T C G T A C G A T A C G T C G A T A C G T
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TCAAATATTT
NATTCAAAT----
 A C G T A C G T A C G T C A G T T A G C C G T A G C T A C G T A C A G T C G T A C G A T A C G T C G A T
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----TCAAATATTT
CGGTTTCAAA-----
 A C G T A C G T A C G T A C G T A C G T C A G T T A G C C G T A G C T A C G T A C A G T C G T A C G A T A C G T C G A T
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TCAAATATTT-----
----ATATTTACATA
 C A G T T A G C C G T A G C T A C G T A C A G T C G T A C G A T A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A

BHLHE23/MA0817.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TCAAATATTT
NAACATATGTTT
 A C G T A C G T C A G T T A G C C G T A G C T A C G T A C A G T C G T A C G A T A C G T C G A T
G C T A C T G A T G C A T G A C C T G A A C G T T C G A G A C T A C T G A C G T A G C T G C A T

Foxd3/MA0041.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TCAAATATTT
AAACAAACATTC
 A C G T A C G T C A G T T A G C C G T A G C T A C G T A C A G T C G T A C G A T A C G T C G A T
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C