Information for 4-CCCTGGTGGRGGCTGT (Motif 5)

A G T C A T G C A G T C A C G T C A T G T C A G C A G T A C T G T C A G C T G A C T A G A T C G A G T C C G A T A C T G A G C T
Reverse Opposite:
C T G A T G A C C G T A A C T G A T G C A G T C G A C T A G T C A G T C G T C A A G T C G A T C C G T A A C T G A T C G T C A G
p-value:1e-13
log p-value:-3.088e+01
Information Content per bp:1.789
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.3 +/- 20.3bp
Average Position of motif in Background29.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGGTGGRGGCTGT
CCCCCTGCTGTG------
 A C G T A C G T A G T C A T G C A G T C A C G T C A T G T C A G C A G T A C T G T C A G C T G A C T A G A T C G A G T C C G A T A C T G A G C T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCCTGGTGGRGGCTGT
GGCCYCCTGCTGDGH-----
 A C G T A C G T A C G T A C G T A G T C A T G C A G T C A C G T C A T G T C A G C A G T A C T G T C A G C T G A C T A G A T C G A G T C C G A T A C T G A G C T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T

GLIS3/MA0737.1/Jaspar

Match Rank:3
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCCTGGTGGRGGCTGT
-CTTCGTGGGGGGTC-
 A G T C A T G C A G T C A C G T C A T G T C A G C A G T A C T G T C A G C T G A C T A G A T C G A G T C C G A T A C T G A G C T
A C G T T A G C C A G T G C A T G A T C T C A G G A C T C T A G A C T G C T A G C T A G A C T G T A C G A G C T T G A C A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCCTGGTGGRGGCTGT----
GCCASCAGGGGGCGCYVNNG
 A G T C A T G C A G T C A C G T C A T G T C A G C A G T A C T G T C A G C T G A C T A G A T C G A G T C C G A T A C T G A G C T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.52
Offset:11
Orientation:forward strand
Alignment:CCCTGGTGGRGGCTGT-
-----------GCTGTG
 A G T C A T G C A G T C A C G T C A T G T C A G C A G T A C T G T C A G C T G A C T A G A T C G A G T C C G A T A C T G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CCCTGGTGGRGGCTGT
-CCTGCTGAGH-----
 A G T C A T G C A G T C A C G T C A T G T C A G C A G T A C T G T C A G C T G A C T A G A T C G A G T C C G A T A C T G A G C T
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGGTGGRGGCTGT
TCNCCTGCTGNGNNN---
 A C G T A C G T A G T C A T G C A G T C A C G T C A T G T C A G C A G T A C T G T C A G C T G A C T A G A T C G A G T C C G A T A C T G A G C T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T

GLIS1/MA0735.1/Jaspar

Match Rank:8
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CCCTGGTGGRGGCTGT
GCTTCGTGGGGGGTCT
 A G T C A T G C A G T C A C G T C A T G T C A G C A G T A C T G T C A G C T G A C T A G A T C G A G T C C G A T A C T G A G C T
T A C G G T A C C G A T G C A T G T A C A C T G G A C T A C T G C T A G A T C G A T C G C A T G A T C G G C A T T G A C C A G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGGTGGRGGCTGT
TNTCCTGCTGTGNNG---
 A C G T A C G T A G T C A T G C A G T C A C G T C A T G T C A G C A G T A C T G T C A G C T G A C T A G A T C G A G T C C G A T A C T G A G C T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:10
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------CCCTGGTGGRGGCTGT
TAGCGCCCCCTGGTGGCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T G C A G T C A C G T C A T G T C A G C A G T A C T G T C A G C T G A C T A G A T C G A G T C C G A T A C T G A G C T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T A C G T A C G T