Information for 3-TCCCCTGCTGGCHATG (Motif 3)

C G A T A G T C G T A C G T A C A G T C A C G T T A C G A T G C A G C T A C T G A C T G A T G C G C T A G T C A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T C A G T A T C G A G T C A G T C C T G A A T C G A T G C C G T A A C T G A C T G C A T G A C T G C G T A
p-value:1e-13
log p-value:-3.204e+01
Information Content per bp:1.823
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.7 +/- 15.9bp
Average Position of motif in Background35.7 +/- 13.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TCCCCTGCTGGCHATG
TAGCGCCCCCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T C G A T A G T C G T A C G T A C A G T C A C G T T A C G A T G C A G C T A C T G A C T G A T G C G C T A G T C A A C G T A C T G
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.63
Offset:-8
Orientation:forward strand
Alignment:--------TCCCCTGCTGGCHATG
CNNBRGCGCCCCCTGSTGGC----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G T C G T A C G T A C A G T C A C G T T A C G A T G C A G C T A C T G A C T G A T G C G C T A G T C A A C G T A C T G
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------TCCCCTGCTGGCHATG
ANAGTGCCACCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G T C G T A C G T A C A G T C A C G T T A C G A T G C A G C T A C T G A C T G A T G C G C T A G T C A A C G T A C T G
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCCCCTGCTGGCHATG
CCCCCTGCTGTG----
 C G A T A G T C G T A C G T A C A G T C A C G T T A C G A T G C A G C T A C T G A C T G A T G C G C T A G T C A A C G T A C T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCCCCTGCTGGCHATG
GGCCYCCTGCTGDGH---
 A C G T A C G T C G A T A G T C G T A C G T A C A G T C A C G T T A C G A T G C A G C T A C T G A C T G A T G C G C T A G T C A A C G T A C T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TCCCCTGCTGGCHATG
TGCCCTGAGGGCA---
 C G A T A G T C G T A C G T A C A G T C A C G T T A C G A T G C A G C T A C T G A C T G A T G C G C T A G T C A A C G T A C T G
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCCCCTGCTGGCHATG
TGCCCNNAGGGCA---
 C G A T A G T C G T A C G T A C A G T C A C G T T A C G A T G C A G C T A C T G A C T G A T G C G C T A G T C A A C G T A C T G
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TCCCCTGCTGGCHATG
TGCCCTGAGGGCA---
 C G A T A G T C G T A C G T A C A G T C A C G T T A C G A T G C A G C T A C T G A C T G A T G C G C T A G T C A A C G T A C T G
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCCCCTGCTGGCHATG
TCNCCTGCTGNGNNN-
 C G A T A G T C G T A C G T A C A G T C A C G T T A C G A T G C A G C T A C T G A C T G A T G C G C T A G T C A A C G T A C T G
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TCCCCTGCTGGCHATG
TNTCCTGCTGTGNNG-
 C G A T A G T C G T A C G T A C A G T C A C G T T A C G A T G C A G C T A C T G A C T G A T G C G C T A G T C A A C G T A C T G
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T