Information for 7-AATATCCATT (Motif 8)

C T G A G C T A A C G T C T G A G C A T A T G C A G T C C G T A A C G T A G C T
Reverse Opposite:
C T G A C G T A A C G T A C T G T A C G C G T A A G C T C G T A C G A T A G C T
p-value:1e-10
log p-value:-2.431e+01
Information Content per bp:1.851
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif33.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets61.5 +/- 21.4bp
Average Position of motif in Background37.7 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-AATATCCATT
GAATATTCAT-
 A C G T C T G A G C T A A C G T C T G A G C A T A T G C A G T C C G T A A C G T A G C T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-AATATCCATT
GHATATKCAT-
 A C G T C T G A G C T A A C G T C T G A G C A T A T G C A G T C C G T A A C G T A G C T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AATATCCATT
AAGATATCCTT-
 A C G T A C G T C T G A G C T A A C G T C T G A G C A T A T G C A G T C C G T A A C G T A G C T
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---AATATCCATT--
ATGAATATTCATGAG
 A C G T A C G T A C G T C T G A G C T A A C G T C T G A G C A T A T G C A G T C C G T A A C G T A G C T A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

ONECUT1/MA0679.1/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AATATCCATT----
ANTATCGATTTTTN
 C T G A G C T A A C G T C T G A G C A T A T G C A G T C C G T A A C G T A G C T A C G T A C G T A C G T A C G T
C T G A C G A T G C A T C T G A C G A T G A T C C T A G T G C A A G C T G A C T C G A T G C A T G A C T A C G T

ONECUT2/MA0756.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AATATCCATT----
ATTATCGATTTTTT
 C T G A G C T A A C G T C T G A G C A T A T G C A G T C C G T A A C G T A G C T A C G T A C G T A C G T A C G T
C G T A C G A T G C A T C G T A C G A T A G T C C A T G G T C A G A C T G A C T C G A T G C A T G A C T A G C T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AATATCCATT
ATTTTCCATT
 C T G A G C T A A C G T C T G A G C A T A T G C A G T C C G T A A C G T A G C T
C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AATATCCATT----
AAAAACCATTAAGG
 C T G A G C T A A C G T C T G A G C A T A T G C A G T C C G T A A C G T A G C T A C G T A C G T A C G T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

PB0028.1_Hbp1_1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AATATCCATT------
NNCATTCATTCATNNN
 C T G A G C T A A C G T C T G A G C A T A T G C A G T C C G T A A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PH0148.1_Pou3f3/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AATATCCATT----
TNNATTATGCATANNTT
 A C G T A C G T A C G T C T G A G C T A A C G T C T G A G C A T A T G C A G T C C G T A A C G T A G C T A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T