Information for 8-TGAGATAMAT (Motif 10)

A C G T A C T G C G T A A C T G C T G A A G C T C T G A G T C A C G T A A C G T
Reverse Opposite:
T G C A C G A T A C G T A G C T T C G A A G C T T G A C A C G T A G T C G T C A
p-value:1e-7
log p-value:-1.770e+01
Information Content per bp:1.763
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif76.4
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets54.8 +/- 26.3bp
Average Position of motif in Background52.2 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGAGATAMAT---
TTGACCTANTTATN
 A C G T A C G T A C T G C G T A A C T G C T G A A G C T C T G A G T C A C G T A A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGAGATAMAT
TGACCTARTT
 A C G T A C T G C G T A A C T G C T G A A G C T C T G A G T C A C G T A A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGAGATAMAT
TTGACAG----
 A C G T A C G T A C T G C G T A A C T G C T G A A G C T C T G A G T C A C G T A A C G T
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TGAGATAMAT
--AGATAAGA
 A C G T A C T G C G T A A C T G C T G A A G C T C T G A G T C A C G T A A C G T
A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGAGATAMAT-
NTGATTGACAGN
 A C G T A C G T A C T G C G T A A C T G C T G A A G C T C T G A G T C A C G T A A C G T A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TGAGATAMAT
AGGTGHCAGACA-
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G C T G A A G C T C T G A G T C A C G T A A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TGAGATAMAT
AGGTGNCAGACAG
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G C T G A A G C T C T G A G T C A C G T A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Gata4/MA0482.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGAGATAMAT
NNGAGATAAGA
 A C G T A C G T A C T G C G T A A C T G C T G A A G C T C T G A G T C A C G T A A C G T
T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

FOS::JUN/MA0099.2/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGAGATAMAT
TGAGTCA---
 A C G T A C T G C G T A A C T G C T G A A G C T C T G A G T C A C G T A A C G T
G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGAGATAMAT
TTGACAGG---
 A C G T A C G T A C T G C G T A A C T G C T G A A G C T C T G A G T C A C G T A A C G T
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T