Information for 7-TTAGAAACTTGRT (Motif 3)

A C G T A G C T C G T A T A C G C G T A G T C A C G T A A G T C A G C T A C G T A C T G C T A G C G A T
Reverse Opposite:
C G T A G A T C G T A C C G T A C T G A A C T G A C G T A C G T A C G T A T G C C G A T C T G A G T C A
p-value:1e-13
log p-value:-3.190e+01
Information Content per bp:1.755
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets25.0 +/- 19.3bp
Average Position of motif in Background33.6 +/- 7.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTAGAAACTTGRT
TTTGAAACCG---
 A C G T A G C T C G T A T A C G C G T A G T C A C G T A A G T C A G C T A C G T A C T G C T A G C G A T
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TTAGAAACTTGRT
----NCACCTGTN
 A C G T A G C T C G T A T A C G C G T A G T C A C G T A A G T C A G C T A C G T A C T G C T A G C G A T
A C G T A C G T A C G T A C G T T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTAGAAACTTGRT
GGTTAGAGACCT---
 A C G T A C G T A C G T A G C T C G T A T A C G C G T A G T C A C G T A A G T C A G C T A C G T A C T G C T A G C G A T
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T A C G T A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTAGAAACTTGRT
TTTCACACCT---
 A C G T A G C T C G T A T A C G C G T A G T C A C G T A A G T C A G C T A C G T A C T G C T A G C G A T
C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T A C G T A C G T A C G T

Hes2/MA0616.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTAGAAACTTGRT
TAACGACACGTGC-
 A C G T A C G T A G C T C G T A T A C G C G T A G T C A C G T A A G T C A G C T A C G T A C T G C T A G C G A T
A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TTAGAAACTTGRT--
---GWAAYHTGABMC
 A C G T A G C T C G T A T A C G C G T A G T C A C G T A A G T C A G C T A C G T A C T G C T A G C G A T A C G T A C G T
A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

Nr2e3/MA0164.1/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TTAGAAACTTGRT
----AAGCTTG--
 A C G T A G C T C G T A T A C G C G T A G T C A C G T A A G T C A G C T A C G T A C T G C T A G C G A T
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TTAGAAACTTGRT
TTTCACACCTN--
 A C G T A G C T C G T A T A C G C G T A G T C A C G T A A G T C A G C T A C G T A C T G C T A G C G A T
G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TTAGAAACTTGRT
CCGTATTATAAACAA---
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A T A C G C G T A G T C A C G T A A G T C A G C T A C G T A C T G C T A G C G A T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A A C G T A C G T A C G T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TTAGAAACTTGRT
--RYHYACCTGB-
 A C G T A G C T C G T A T A C G C G T A G T C A C G T A A G T C A G C T A C G T A C T G C T A G C G A T
A C G T A C G T T C A G A G C T G C T A A G T C C G T A G T A C A T G C A C G T A C T G A C G T A C G T