Information for 7-GCGGAATTATTGT (Motif 4)

A C T G G T A C A C T G C T A G C G T A C G T A A C G T C G A T C G T A A G C T A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A C T G A A C G T C G T A C G T A C G A T A C G T A G T C A G T C A C T G A G T C
p-value:1e-10
log p-value:-2.497e+01
Information Content per bp:1.929
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.2 +/- 38.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:GCGGAATTATTGT
----AATTATT--
 A C T G G T A C A C T G C T A G C G T A C G T A A C G T C G A T C G T A A G C T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T

PH0072.1_Hoxc8/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GCGGAATTATTGT
TTGGGGTAATTAACGT
 A C G T A C G T A C G T A C T G G T A C A C T G C T A G C G T A C G T A A C G T C G A T C G T A A G C T A C G T A C T G A C G T
A C G T G C A T C A T G C T A G C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A G T C A A G T C C A T G A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCGGAATTATTGT------
---AANTTATTGTTCTNNA
 A C T G G T A C A C T G C T A G C G T A C G T A A C G T C G A T C G T A A G C T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

PB0074.1_Sox8_1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCGGAATTATTGT------
--GTATCTATTGTTCTTTA
 A C T G G T A C A C T G C T A G C G T A C G T A A C G T C G A T C G T A A G C T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A

PH0022.1_Dlx3/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GCGGAATTATTGT--
NNNGGTAATTATNGNGN
 A C G T A C G T A C T G G T A C A C T G C T A G C G T A C G T A A C G T C G A T C G T A A G C T A C G T A C T G A C G T A C G T A C G T
C A T G C G A T A T G C C A T G T C A G G A C T G C T A C G T A A C G T C G A T C T G A G A C T G T A C A C T G A G T C C A T G T G C A

Sox17/MA0078.1/Jaspar

Match Rank:6
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GCGGAATTATTGT-
-----CTCATTGTC
 A C T G G T A C A C T G C T A G C G T A C G T A A C G T C G A T C G T A A G C T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

PB0072.1_Sox5_1/Jaspar

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCGGAATTATTGT------
---NNTTTATTGTTCTNNN
 A C T G G T A C A C T G C T A G C G T A C G T A A C G T C G A T C G T A A G C T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PH0023.1_Dlx4/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCGGAATTATTGT--
GTCGGTAATTATNGNGN
 A C G T A C G T A C T G G T A C A C T G C T A G C G T A C G T A A C G T C G A T C G T A A G C T A C G T A C T G A C G T A C G T A C G T
C A T G C G A T A T G C C A T G A C T G G A C T C G T A C G T A A C G T G C A T C T G A G A C T G T C A A C T G A G T C C A T G T G A C

PB0175.1_Sox4_2/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCGGAATTATTGT------
--GGAAAAATTGTTAGGAA
 A C T G G T A C A C T G C T A G C G T A C G T A A C G T C G A T C G T A A G C T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PB0172.1_Sox1_2/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCGGAATTATTGT-----
---CTATAATTGTTAGCG
 A C T G G T A C A C T G C T A G C G T A C G T A A C G T C G A T C G T A A G C T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C A G C T C T G A G A C T G C T A C T G A G A C T A G C T T A C G A C G T A C G T T G C A A C G T A G T C T A C G