Information for 8-YAATATGCAT (Motif 9)

G A C T G C T A G T C A G C A T T G C A G A C T C A T G G T A C G C T A G C A T
Reverse Opposite:
C G T A C G A T C A T G G T A C C T G A A C G T C G T A C A G T C G A T C T G A
p-value:1e-9
log p-value:-2.143e+01
Information Content per bp:1.584
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif42.1
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets56.0 +/- 25.9bp
Average Position of motif in Background53.0 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:YAATATGCAT
GHATATKCAT
 G A C T G C T A G T C A G C A T T G C A G A C T C A T G G T A C G C T A G C A T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:YAATATGCAT
GAATATTCAT
 G A C T G C T A G T C A G C A T T G C A G A C T C A T G G T A C G C T A G C A T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--YAATATGCAT-----
TNNATTATGCATANNTT
 A C G T A C G T G A C T G C T A G T C A G C A T T G C A G A C T C A T G G T A C G C T A G C A T A C G T A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.74
Offset:2
Orientation:forward strand
Alignment:YAATATGCAT--
--ATATGCAAAT
 G A C T G C T A G T C A G C A T T G C A G A C T C A T G G T A C G C T A G C A T A C G T A C G T
A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:YAATATGCAT-----
--ATATGCAAATNNN
 G A C T G C T A G T C A G C A T T G C A G A C T C A T G G T A C G C T A G C A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--YAATATGCAT---
ATGAATATTCATGAG
 A C G T A C G T G A C T G C T A G T C A G C A T T G C A G A C T C A T G G T A C G C T A G C A T A C G T A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:YAATATGCAT--
--TTATGCAAAT
 G A C T G C T A G T C A G C A T T G C A G A C T C A T G G T A C G C T A G C A T A C G T A C G T
A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:8
Score:0.71
Offset:1
Orientation:forward strand
Alignment:YAATATGCAT---
-AATATGCAAATT
 G A C T G C T A G T C A G C A T T G C A G A C T C A T G G T A C G C T A G C A T A C G T A C G T A C G T
A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:YAATATGCAT------
TTGTATGCAAATTAGA
 G A C T G C T A G T C A G C A T T G C A G A C T C A T G G T A C G C T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--YAATATGCAT
TGAATTATGCAT
 A C G T A C G T G A C T G C T A G T C A G C A T T G C A G A C T C A T G G T A C G C T A G C A T
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T