Information for 7-RGCACAGKGYCKCCCA (Motif 11)

C T G A A C T G A G T C C T G A A G T C C G T A A C T G A C G T A C T G A G T C A G T C C A T G A G T C A G T C A T G C G T C A
Reverse Opposite:
A C G T A T C G A C T G A C T G G T A C A C T G C T A G A G T C T G C A A G T C A C G T A C T G A G C T A C T G A G T C A G C T
p-value:1e-8
log p-value:-2.010e+01
Information Content per bp:1.876
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.7 +/- 10.0bp
Average Position of motif in Background51.8 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---RGCACAGKGYCKCCCA
CCAGGAACAG---------
 A C G T A C G T A C G T C T G A A C T G A G T C C T G A A G T C C G T A A C T G A C G T A C T G A G T C A G T C C A T G A G T C A G T C A T G C G T C A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:RGCACAGKGYCKCCCA
--CACAGN--------
 C T G A A C T G A G T C C T G A A G T C C G T A A C T G A C G T A C T G A G T C A G T C C A T G A G T C A G T C A T G C G T C A
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-RGCACAGKGYCKCCCA
NAGNACANNNTGTNCT-
 A C G T C T G A A C T G A G T C C T G A A G T C C G T A A C T G A C G T A C T G A G T C A G T C C A T G A G T C A G T C A T G C G T C A
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RGCACAGKGYCKCCCA
NAGAACAGNCTGTNCT-
 A C G T C T G A A C T G A G T C C T G A A G T C C G T A A C T G A C G T A C T G A G T C A G T C C A T G A G T C A G T C A T G C G T C A
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A C G T

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:5
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:RGCACAGKGYCKCCCA----
--------YCCGCCCACGCN
 C T G A A C T G A G T C C T G A A G T C C G T A A C T G A C G T A C T G A G T C A G T C C A T G A G T C A G T C A T G C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G T A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C C T A G A T G C T C G A

POL003.1_GC-box/Jaspar

Match Rank:6
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:RGCACAGKGYCKCCCA--
----NAGCCCCGCCCCCN
 C T G A A C T G A G T C C T G A A G T C C G T A A C T G A C G T A C T G A G T C A G T C C A T G A G T C A G T C A T G C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T

Ar/MA0007.3/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-RGCACAGKGYCKCCCA
GGGAACACGGTGTACCC
 A C G T C T G A A C T G A G T C C T G A A G T C C G T A A C T G A C G T A C T G A G T C A G T C C A T G A G T C A G T C A T G C G T C A
C T A G C T A G C T A G G C T A G T C A T A G C T C G A A G T C T A C G T C A G G A C T A T C G G C A T C G T A G A T C G A T C G A T C

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:RGCACAGKGYCKCCCA
---ACAAAGGNBCCT-
 C T G A A C T G A G T C C T G A A G T C C G T A A C T G A C G T A C T G A G T C A G T C C A T G A G T C A G T C A T G C G T C A
A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T

NR3C2/MA0727.1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-RGCACAGKGYCKCCCA
GGGAACATTGTGTTCCC
 A C G T C T G A A C T G A G T C C T G A A G T C C G T A A C T G A C G T A C T G A G T C A G T C C A T G A G T C A G T C A T G C G T C A
C A T G T C A G C T A G C G T A C T G A A T G C C T G A G A C T G C A T C T A G G A C T A T C G A C G T G C A T G T A C G A T C G T A C

KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:RGCACAGKGYCKCCCA--
------GCCMCGCCCMCY
 C T G A A C T G A G T C C T G A A G T C C G T A A C T G A C G T A C T G A G T C A G T C C A T G A G T C A G T C A T G C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A G T C G A T C T G A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C G A T C