Information for 1-YGCCCCCTAGTGG (Motif 1)

A G T C C A T G T A G C G A T C G T A C G A T C A G T C G A C T C T G A A T C G G C A T A C T G C T A G
Reverse Opposite:
G A T C G T A C C G T A T A G C G A C T C T G A A C T G C T A G C A T G C A T G A T C G G T A C T C A G
p-value:1e-605
log p-value:-1.394e+03
Information Content per bp:1.642
Number of Target Sequences with motif493.0
Percentage of Target Sequences with motif58.27%
Number of Background Sequences with motif894.7
Percentage of Background Sequences with motif1.88%
Average Position of motif in Targets53.0 +/- 14.0bp
Average Position of motif in Background48.5 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.95
Offset:-6
Orientation:forward strand
Alignment:------YGCCCCCTAGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C A T G T A G C G A T C G T A C G A T C A G T C G A C T C T G A A T C G G C A T A C T G C T A G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.94
Offset:-3
Orientation:reverse strand
Alignment:---YGCCCCCTAGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C C A T G T A G C G A T C G T A C G A T C A G T C G A C T C T G A A T C G G C A T A C T G C T A G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.92
Offset:-4
Orientation:forward strand
Alignment:----YGCCCCCTAGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C C A T G T A G C G A T C G T A C G A T C A G T C G A C T C T G A A T C G G C A T A C T G C T A G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----YGCCCCCTAGTGG
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A C G T A C G T A C G T A G T C C A T G T A G C G A T C G T A C G A T C A G T C G A C T C T G A A T C G G C A T A C T G C T A G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:YGCCCCCTAGTGG--
GACCCCCCGCTGTGC
 A G T C C A T G T A G C G A T C G T A C G A T C A G T C G A C T C T G A A T C G G C A T A C T G C T A G A C G T A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:YGCCCCCTAGTGG--
GGCCYCCTGCTGDGH
 A G T C C A T G T A G C G A T C G T A C G A T C A G T C G A C T C T G A A T C G G C A T A C T G C T A G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0101.1_Zic1_1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:YGCCCCCTAGTGG--
-CCCCCCCGGGGGNN
 A G T C C A T G T A G C G A T C G T A C G A T C A G T C G A C T C T G A A T C G G C A T A C T G C T A G A C G T A C G T
A C G T T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:YGCCCCCTAGTGG-
--CCCCCTGCTGTG
 A G T C C A T G T A G C G A T C G T A C G A T C A G T C G A C T C T G A A T C G G C A T A C T G C T A G A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:YGCCCCCTAGTGG--
CCCCCCCGGGGGGGT
 A G T C C A T G T A G C G A T C G T A C G A T C A G T C G A C T C T G A A T C G G C A T A C T G C T A G A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:YGCCCCCTAGTGG-
GACCCCCCGCTGTG
 A G T C C A T G T A G C G A T C G T A C G A T C A G T C G A C T C T G A A T C G G C A T A C T G C T A G A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G