Information for 6-AGGTGGCAGCAGA (Motif 3)

C G T A A C T G A C T G A C G T C T A G A C T G A G T C C G T A A C T G A G T C G T C A C T A G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C T G A G T C A C G T A C T G A G T C A G T C G T C A A G T C A G T C A C G T
p-value:1e-17
log p-value:-4.091e+01
Information Content per bp:1.939
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets62.3 +/- 24.0bp
Average Position of motif in Background43.3 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGTGGCAGCAGA
AGGTGTCA-----
 C G T A A C T G A C T G A C G T C T A G A C T G A G T C C G T A A C T G A G T C G T C A C T A G C G T A
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGGTGGCAGCAGA
CAAGATGGCGGC---
 A C G T A C G T C G T A A C T G A C T G A C G T C T A G A C T G A G T C C G T A A C T G A G T C G T C A C T A G C G T A
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGGTGGCAGCAGA
GGTTGGCAT----
 C G T A A C T G A C T G A C G T C T A G A C T G A G T C C G T A A C T G A G T C G T C A C T A G C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGGTGGCAGCAGA--
----GTCAGCANNTN
 C G T A A C T G A C T G A C G T C T A G A C T G A G T C C G T A A C T G A G T C G T C A C T A G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.58
Offset:-8
Orientation:reverse strand
Alignment:--------AGGTGGCAGCAGA
TGGCCACCAGGTGGCACTNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T C T A G A C T G A G T C C G T A A C T G A G T C G T C A C T A G C G T A
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------AGGTGGCAGCAGA-
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T C T A G A C T G A G T C C G T A A C T G A G T C G T C A C T A G C G T A A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.57
Offset:-8
Orientation:forward strand
Alignment:--------AGGTGGCAGCAGA
TGGCCACCAGGGGGCGCTA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T C T A G A C T G A G T C C G T A A C T G A G T C G T C A C T A G C G T A
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T

TBX5/MA0807.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGTGGCAGCAGA
AGGTGTGA-----
 C G T A A C T G A C T G A C G T C T A G A C T G A G T C C G T A A C T G A G T C G T C A C T A G C G T A
C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGGTGGCAGCAGA
-TGAGTCAGCA--
 C G T A A C T G A C T G A C G T C T A G A C T G A G T C C G T A A C T G A G T C G T C A C T A G C G T A
A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGTGGCAGCAGA
AGGAAACAGCTG-
 C G T A A C T G A C T G A C G T C T A G A C T G A G T C C G T A A C T G A G T C G T C A C T A G C G T A
T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G A C G T