Information for 8-GGCGCCCGAC (Motif 9)

A C T G A T C G A G T C T C A G A T G C A G T C A G T C A C T G T C G A A G T C
Reverse Opposite:
T C A G A G C T T G A C T C A G A C T G A T C G A G T C C T A G A T G C A G T C
p-value:1e-8
log p-value:-1.966e+01
Information Content per bp:1.832
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif150.4
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets53.4 +/- 26.9bp
Average Position of motif in Background48.7 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F1/MA0024.3/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GGCGCCCGAC
TTTGGCGCCAAA-
 A C G T A C G T A C G T A C T G A T C G A G T C T C A G A T G C A G T C A G T C A C T G T C G A A G T C
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A A C G T

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GGCGCCCGAC
GGCGCGCT--
 A C T G A T C G A G T C T C A G A T G C A G T C A G T C A C T G T C G A A G T C
C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----GGCGCCCGAC-
NNNGGGGCGCCCCCNN
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G A G T C T C A G A T G C A G T C A G T C A C T G T C G A A G T C A C G T
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

PB0008.1_E2F2_1/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GGCGCCCGAC
ATAAAGGCGCGCGAT
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G A G T C T C A G A T G C A G T C A G T C A C T G T C G A A G T C
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T

PB0113.1_E2F3_2/Jaspar

Match Rank:5
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------GGCGCCCGAC-
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A G T C T C A G A T G C A G T C A G T C A C T G T C G A A G T C A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GGCGCCCGAC
ATAAGGGCGCGCGAT
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G A G T C T C A G A T G C A G T C A G T C A C T G T C G A A G T C
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

PB0112.1_E2F2_2/Jaspar

Match Rank:7
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------GGCGCCCGAC-
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A G T C T C A G A T G C A G T C A G T C A C T G T C G A A G T C A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGCGCCCGAC-
AGGTGHCAGACA
 A C G T A C T G A T C G A G T C T C A G A T G C A G T C A G T C A C T G T C G A A G T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GGCGCCCGAC---
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T A C T G A T C G A G T C T C A G A T G C A G T C A G T C A C T G T C G A A G T C A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGCGCCCGAC--
AGGTGNCAGACAG
 A C G T A C T G A T C G A G T C T C A G A T G C A G T C A G T C A C T G T C G A A G T C A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G