Information for 12-ARMCTTWWGTGSYAAA (Motif 19)

C G T A C T G A T G A C A G T C A C G T C G A T C G A T C G A T A C T G C G A T A C T G A T G C A G T C C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C C G T A C G T A C G T A C G T A A C T G A C T G A G C T A C G T
p-value:1e-8
log p-value:-2.032e+01
Information Content per bp:1.839
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets29.5 +/- 20.5bp
Average Position of motif in Background18.6 +/- 8.6bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ARMCTTWWGTGSYAAA-
NTNNTTAAGTGGNTNAN
 C G T A C T G A T G A C A G T C A C G T C G A T C G A T C G A T A C T G C G A T A C T G A T G C A G T C C G T A C G T A C G T A A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.58
Offset:7
Orientation:forward strand
Alignment:ARMCTTWWGTGSYAAA-
-------GGTGCCAAGT
 C G T A C T G A T G A C A G T C A C G T C G A T C G A T C G A T A C T G C G A T A C T G A T G C A G T C C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:ARMCTTWWGTGSYAAA
----TTAAGTGGT---
 C G T A C T G A T G A C A G T C A C G T C G A T C G A T C G A T A C T G C G A T A C T G A T G C A G T C C G T A C G T A C G T A
A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:ARMCTTWWGTGSYAAA
----TTAAGTGGN---
 C G T A C T G A T G A C A G T C A C G T C G A T C G A T C G A T A C T G C G A T A C T G A T G C A G T C C G T A C G T A C G T A
A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:ARMCTTWWGTGSYAAA
---CTYRAGTGSY---
 C G T A C T G A T G A C A G T C A C G T C G A T C G A T C G A T A C T G C G A T A C T G A T G C A G T C C G T A C G T A C G T A
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ARMCTTWWGTGSYAAA-
NTNNTTAAGTGGTTANN
 C G T A C T G A T G A C A G T C A C G T C G A T C G A T C G A T A C T G C G A T A C T G A T G C A G T C C G T A C G T A C G T A A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ARMCTTWWGTGSYAAA
AATNTTAAGTGGNTNN
 C G T A C T G A T G A C A G T C A C G T C G A T C G A T C G A T A C T G C G A T A C T G A T G C A G T C C G T A C G T A C G T A
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

E2F8/MA0865.1/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:ARMCTTWWGTGSYAAA
----TTTGGCGGGAAA
 C G T A C T G A T G A C A G T C A C G T C G A T C G A T C G A T A C T G C G A T A C T G A T G C A G T C C G T A C G T A C G T A
A C G T A C G T A C G T A C G T C G A T A C G T A G C T A T C G C T A G A T G C A T C G C T A G C T A G G T C A C T G A C G T A

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:ARMCTTWWGTGSYAAA
---NTCAAGTGGN---
 C G T A C T G A T G A C A G T C A C G T C G A T C G A T C G A T A C T G C G A T A C T G A T G C A G T C C G T A C G T A C G T A
A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:ARMCTTWWGTGSYAAA
---BTBRAGTGSN---
 C G T A C T G A T G A C A G T C A C G T C G A T C G A T C G A T A C T G C G A T A C T G A T G C A G T C C G T A C G T A C G T A
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T