Information for 11-AAGATGTACTTGG (Motif 17)

C G T A C G T A C T A G C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C T G C T A G
Reverse Opposite:
A G T C A G T C C G T A C G T A A C T G A C G T C G T A A G T C C G T A A C G T A G T C A C G T A C G T
p-value:1e-8
log p-value:-2.032e+01
Information Content per bp:1.952
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.5 +/- 33.1bp
Average Position of motif in Background23.4 +/- 8.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAGATGTACTTGG--
ACTCCAAGTACTTGGAA
 A C G T A C G T C G T A C G T A C T A G C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C T G C T A G A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

PH0087.1_Irx6/Jaspar

Match Rank:2
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----AAGATGTACTTGG
ANTTNTACATGTANTTN-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T A G C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C T G C T A G
G C T A C G A T C G A T G C A T A C G T C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G A C T C G A T C G A T C G A T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAGATGTACTTGG
AAGATATCCTT--
 C G T A C G T A C T A G C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C T G C T A G
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AAGATGTACTTGG
---CTGTTCCTGG
 C G T A C G T A C T A G C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C T G C T A G
A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

PH0117.1_Nkx3-1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAGATGTACTTGG---
TACTAAGTACTTAAATG
 A C G T C G T A C G T A C T A G C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C T G C T A G A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AAGATGTACTTGG
--BNTGDCCTTG-
 C G T A C G T A C T A G C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C T G C T A G
A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AAGATGTACTTGG-
----TGACCTTGAN
 C G T A C G T A C T A G C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C T G C T A G A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AAGATGTACTTGG-
----TGACCTTGAV
 C G T A C G T A C T A G C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C T G C T A G A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

PH0084.1_Irx3_2/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AAGATGTACTTGG
AATATACATGTAATATA
 A C G T A C G T A C G T A C G T C G T A C G T A C T A G C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C T G C T A G
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T

PH0086.1_Irx5/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----AAGATGTACTTGG
ANTNNTACATGTANNTN-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T A G C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C T G C T A G
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T A C G T