Information for 4-GMATKAACGT (Motif 16)

A C T G G T A C C G T A A C G T A C G T C G T A C G T A A G T C A C T G A C G T
Reverse Opposite:
C G T A A G T C A C T G A C G T C G A T G T C A C G T A A C G T A C T G A G T C
p-value:1e-8
log p-value:-2.068e+01
Information Content per bp:1.904
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets42.2 +/- 28.3bp
Average Position of motif in Background40.7 +/- 13.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0035.1_Gsc/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GMATKAACGT--
NNAAGGGATTAACGANT
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C G T A C G T C G T A C G T A A G T C A C T G A C G T A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

HOXA5/MA0158.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GMATKAACGT
-AATTAGTG-
 A C T G G T A C C G T A A C G T A C G T C G T A C G T A A G T C A C T G A C G T
A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T

GMEB2/MA0862.1/Jaspar

Match Rank:3
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GMATKAACGT--
----TTACGTAA
 A C T G G T A C C G T A A C G T A C G T C G T A C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C A C T G A G C T G T C A T G C A

PH0015.1_Crx/Jaspar

Match Rank:4
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------GMATKAACGT
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C G T A C G T C G T A C G T A A G T C A C T G A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

Gmeb1/MA0615.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GMATKAACGT-------
GAGTGTACGTAAGATGG
 A C T G G T A C C G T A A C G T A C G T C G T A C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G T C A A C T G A C G T C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T A C G C G T A A G C T T C A G A T C G

PB0027.1_Gmeb1_1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GMATKAACGT-------
GAGTGTACGTAAGATGG
 A C T G G T A C C G T A A C G T A C G T C G T A C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G T C A A C T G A C G T C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T A C G C G T A A G C T T C A G A T C G

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GMATKAACGT-
---BGCACGTA
 A C T G G T A C C G T A A C G T A C G T C G T A C G T A A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

PH0174.1_Vax1/Jaspar

Match Rank:8
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------GMATKAACGT
CTNNGNTAATTAACNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C G T A C G T C G T A C G T A A G T C A C T G A C G T
G A T C G C A T C T A G C T A G T C A G A G C T G A C T G T C A G C T A C G A T C A G T C T G A C G T A A G T C A T C G A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------GMATKAACGT-
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C G T A C G T C G T A C G T A A G T C A C T G A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GMATKAACGT
YCATTAMC--
 A C T G G T A C C G T A A C G T A C G T C G T A C G T A A G T C A C T G A C G T
A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T