Information for 11-AAGCTTAATA (Motif 20)

C G T A C G T A A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C G T C G T A C G T A A C T G A G T C A C G T A C G T
p-value:1e-7
log p-value:-1.684e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.2 +/- 28.7bp
Average Position of motif in Background64.9 +/- 22.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-AAGCTTAATA
CAAGCTT----
 A C G T C G T A C G T A A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AAGCTTAATA--
-ATATTAATTAA
 C G T A C G T A A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T
A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

Arid3a/MA0151.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AAGCTTAATA
---TTTAAT-
 C G T A C G T A A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A
A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AAGCTTAATA--
----TTAATTAN
 C G T A C G T A A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

PH0151.1_Pou6f1_1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AAGCTTAATA-----
NNNACCTCATTATCNTN
 A C G T A C G T C G T A C G T A A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

POU6F2/MA0793.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAGCTTAATA-
-AGCTCATTAT
 C G T A C G T A A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A A C G T
A C G T C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T

NKX6-1/MA0674.1/Jaspar

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AAGCTTAATA--
----TTAATTAN
 C G T A C G T A A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C

PH0152.1_Pou6f1_2/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AAGCTTAATA-----
GCAACCTCATTATNNNN
 A C G T A C G T C G T A C G T A A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

GSX2/MA0893.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AAGCTTAATA---
---NTTAATTAGN
 C G T A C G T A A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AAGCTTAATA------
--CCTTAATNGNTTTT
 C G T A C G T A A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T