p-value: | 1e-7 |
log p-value: | -1.809e+01 |
Information Content per bp: | 1.814 |
Number of Target Sequences with motif | 17.0 |
Percentage of Target Sequences with motif | 2.12% |
Number of Background Sequences with motif | 177.2 |
Percentage of Background Sequences with motif | 0.37% |
Average Position of motif in Targets | 53.9 +/- 28.8bp |
Average Position of motif in Background | 51.4 +/- 25.9bp |
Strand Bias (log2 ratio + to - strand density) | -1.3 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer
Match Rank: | 1 |
Score: | 0.69 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --AATCCAKCCT GYCATCMATCAT |
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Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer
Match Rank: | 2 |
Score: | 0.60 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -AATCCAKCCT TAATCCCN--- |
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PB0185.1_Tcf1_2/Jaspar
Match Rank: | 3 |
Score: | 0.59 |
Offset: | -3 |
Orientation: | reverse strand |
Alignment: | ---AATCCAKCCT- NNTAATCCNGNCNN |
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Pitx1/MA0682.1/Jaspar
Match Rank: | 4 |
Score: | 0.59 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --AATCCAKCCT TTAATCCC---- |
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Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer
Match Rank: | 5 |
Score: | 0.59 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---AATCCAKCCT NYTAATCCYB--- |
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PITX3/MA0714.1/Jaspar
Match Rank: | 6 |
Score: | 0.58 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---AATCCAKCCT CTTAATCCC---- |
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PB0171.1_Sox18_2/Jaspar
Match Rank: | 7 |
Score: | 0.58 |
Offset: | -6 |
Orientation: | reverse strand |
Alignment: | ------AATCCAKCCT NNNNTGAATTCANNNC |
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Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer
Match Rank: | 8 |
Score: | 0.57 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | AATCCAKCCT ATTGCATCAK |
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CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer
Match Rank: | 9 |
Score: | 0.57 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---AATCCAKCCT GCTAATCC----- |
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POL002.1_INR/Jaspar
Match Rank: | 10 |
Score: | 0.57 |
Offset: | 3 |
Orientation: | forward strand |
Alignment: | AATCCAKCCT- ---TCAGTCTT |
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