Information for 6-AATTACCACA (Motif 9)

C G T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G A C T G A C G T C G T A G T C A A C G T A C G T
p-value:1e-8
log p-value:-1.971e+01
Information Content per bp:1.962
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.0 +/- 22.7bp
Average Position of motif in Background56.1 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AATTACCACA---
-NWAACCACADNN
 C G T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

PH0053.1_Hoxa6/Jaspar

Match Rank:2
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----AATTACCACA-
AAGGTAATTACCTAAT
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A A G T C C G T A A C G T
T C G A G T C A C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A T G A C G A T C G A C T G T C A C G T A C A G T

Hoxb5/MA0904.1/Jaspar

Match Rank:3
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----AATTACCACA-
ACGGTAATTAGCTCAT
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A A G T C C G T A A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PH0060.1_Hoxb5/Jaspar

Match Rank:4
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----AATTACCACA-
ACGGTAATTAGCTCAT
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A A G T C C G T A A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

Hoxd3/MA0912.1/Jaspar

Match Rank:5
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----AATTACCACA-
ANGNTAATTANCNCAN
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A A G T C C G T A A C G T
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

PH0079.1_Hoxd3/Jaspar

Match Rank:6
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----AATTACCACA-
ANGNTAATTANCNCAN
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A A G T C C G T A A C G T
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

PH0081.1_Pdx1/Jaspar

Match Rank:7
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----AATTACCACA-
AAGGTAATTAGCTCAT
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A A G T C C G T A A C G T
T G C A T G C A C T A G A T C G G A C T T G C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T T A G C C G T A C A G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:AATTACCACA--
--AAACCACAGC
 C G T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A A G T C C G T A A C G T A C G T
A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

PH0103.1_Meox1/Jaspar

Match Rank:9
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----AATTACCACA-
GAGGTAATTACCTCAG
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A A G T C C G T A A C G T
T C A G T G C A C A T G C A T G G A C T T G C A G C T A C A G T A C G T C T G A A T G C G T A C G A C T A G T C C G T A C T A G

PH0049.1_Hoxa2/Jaspar

Match Rank:10
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----AATTACCACA-
AAGGTAATTAGCTCAT
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A A G T C C G T A A C G T
C T G A T G C A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A T A C G G A T C G A C T G T A C C G T A C G A T