Information for 5-GAGGACTCTCCAA (Motif 3)

C T A G C G T A C T A G A C T G C T G A A G T C A G C T G A T C A G C T A G T C A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G C T A G C T G A C T A G T C G A A C T G A G C T A G T C A G T C A C G T A G T C
p-value:1e-15
log p-value:-3.509e+01
Information Content per bp:1.806
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.2 +/- 22.6bp
Average Position of motif in Background63.2 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REL/MA0101.1/Jaspar

Match Rank:1
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGGACTCTCCAA
-GGGGATTTCC--
 C T A G C G T A C T A G A C T G C T G A A G T C A G C T G A T C A G C T A G T C A G T C C G T A C G T A
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGGACTCTCCAA
-GGGAATTTCC--
 C T A G C G T A C T A G A C T G C T G A A G T C A G C T G A T C A G C T A G T C A G T C C G T A C G T A
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GAGGACTCTCCAA
CNAGGCCT------
 A C G T C T A G C G T A C T A G A C T G C T G A A G T C A G C T G A T C A G C T A G T C A G T C C G T A C G T A
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAGGACTCTCCAA
CTAGGCCT------
 A C G T C T A G C G T A C T A G A C T G C T G A A G T C A G C T G A T C A G C T A G T C A G T C C G T A C G T A
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GAGGACTCTCCAA
GATGACTCAGCA-
 C T A G C G T A C T A G A C T G C T G A A G T C A G C T G A T C A G C T A G T C A G T C C G T A C G T A
T A C G T C G A C A G T A C T G G C T A A T G C C G A T G T A C C G T A A C T G T A G C C G T A A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GAGGACTCTCCAA
---NSCACTYVAV
 C T A G C G T A C T A G A C T G C T G A A G T C A G C T G A T C A G C T A G T C A G T C C G T A C G T A
A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GAGGACTCTCCAA
GGGAGGACNG-----
 A C G T A C G T C T A G C G T A C T A G A C T G C T G A A G T C A G C T G A T C A G C T A G T C A G T C C G T A C G T A
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:8
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---GAGGACTCTCCAA
NNATTGGACTTTNGNN
 A C G T A C G T A C G T C T A G C G T A C T A G A C T G C T G A A G T C A G C T G A T C A G C T A G T C A G T C C G T A C G T A
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

MF0003.1_REL_class/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GAGGACTCTCCAA
-GGGGATTTCC--
 C T A G C G T A C T A G A C T G C T G A A G T C A G C T G A T C A G C T A G T C A G T C C G T A C G T A
A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GAGGACTCTCCAA
--AASCACTCAA-
 C T A G C G T A C T A G A C T G C T G A A G T C A G C T G A T C A G C T A G T C A G T C C G T A C G T A
A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T