Information for 6-CTTTTTAAAAGAA (Motif 9)

G T A C C G A T A C G T A G C T A C G T G C A T C G T A C G T A C T G A C G T A C T A G G C T A C T G A
Reverse Opposite:
A G C T C A G T A G T C C G A T A G C T A C G T G C A T C G T A C G T A C T G A C G T A C G T A C A T G
p-value:1e-6
log p-value:-1.546e+01
Information Content per bp:1.771
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif47.3
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets55.4 +/- 23.8bp
Average Position of motif in Background43.2 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTTTTTAAAAGAA
-NTTTTACGAGN-
 G T A C C G A T A C G T A G C T A C G T G C A T C G T A C G T A C T G A C G T A C T A G G C T A C T G A
A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTTTTTAAAAGAA----
GTTAAAAAAAAAAATTA
 G T A C C G A T A C G T A G C T A C G T G C A T C G T A C G T A C T G A C G T A C T A G G C T A C T G A A C G T A C G T A C G T A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTTTTTAAAAGAA
-NATTCAAAT---
 G T A C C G A T A C G T A G C T A C G T G C A T C G T A C G T A C T G A C G T A C T A G G C T A C T G A
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTTTTTAAAAGAA
CGGTTTCAAA----
 A C G T G T A C C G A T A C G T A G C T A C G T G C A T C G T A C G T A C T G A C G T A C T A G G C T A C T G A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTTTTTAAAAGAA
GNCTATAAAAGG-
 G T A C C G A T A C G T A G C T A C G T G C A T C G T A C G T A C T G A C G T A C T A G G C T A C T G A
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTTAAAAGAA--
NAATTTTACGAGNTNN
 A C G T G T A C C G A T A C G T A G C T A C G T G C A T C G T A C G T A C T G A C G T A C T A G G C T A C T G A A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PB0116.1_Elf3_2/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTTTTTAAAAGAA-----
-GTTCAAAAAAAAAATTC
 G T A C C G A T A C G T A G C T A C G T G C A T C G T A C G T A C T G A C G T A C T A G G C T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTTAAAAGAA
TTTTTTTTCNNGTN
 A C G T G T A C C G A T A C G T A G C T A C G T G C A T C G T A C G T A C T G A C G T A C T A G G C T A C T G A
G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTTAAAAGAA--
ANATTTTACGAGNNNN
 A C G T G T A C C G A T A C G T A G C T A C G T G C A T C G T A C G T A C T G A C G T A C T A G G C T A C T G A A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTTTTTAAAAGAA
--TTTTATTRGN-
 G T A C C G A T A C G T A G C T A C G T G C A T C G T A C G T A C T G A C G T A C T A G G C T A C T G A
A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T