Information for 5-GGGGTTTGCCAGGCCC (Motif 4)

A T C G A C T G A C T G A C T G C G A T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A T G C A G T C A G T C
Reverse Opposite:
A C T G A C T G A T C G A G T C A G T C A C G T C T A G T C A G A G T C C G T A C G T A C G T A A G T C A G T C A G T C A T G C
p-value:1e-10
log p-value:-2.512e+01
Information Content per bp:1.923
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.4 +/- 17.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGGGTTTGCCAGGCCC
GGGGATTTCC------
 A T C G A C T G A C T G A C T G C G A T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A T G C A G T C A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GGGGTTTGCCAGGCCC
-----TTGCCAAG---
 A T C G A C T G A C T G A C T G C G A T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A T G C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGGGTTTGCCAGGCCC--
--GGATTGACAGGTCNTT
 A T C G A C T G A C T G A C T G C G A T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A C G T
A C G T A C G T A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

PH0141.1_Pknox2/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGGGTTTGCCAGGCCC--
--NNATTGACAGGTGCTT
 A T C G A C T G A C T G A C T G C G A T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A C G T
A C G T A C G T T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGGGTTTGCCAGGCCC
GGGGATTTCC------
 A T C G A C T G A C T G A C T G C G A T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A T G C A G T C A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GGGGTTTGCCAGGCCC
-----TTGACAGC---
 A T C G A C T G A C T G A C T G C G A T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A T G C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGGGTTTGCCAGGCCC
NGGGGATTTCCC-----
 A C G T A T C G A C T G A C T G A C T G C G A T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A T G C A G T C A G T C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T A C G T A C G T

SP4/MA0685.1/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GGGGTTTGCCAGGCCC-----
----TAAGCCACGCCCCCTTT
 A T C G A C T G A C T G A C T G C G A T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C T A C T G A C T A G G T A C A G T C T G C A G T A C A C T G T A G C T G A C A G T C G T A C G A T C G C A T G A C T G A C T

PH0105.1_Meis3/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGGGTTTGCCAGGCCC--
--GTATTGACAGGTNNTT
 A T C G A C T G A C T G A C T G C G A T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A C G T
A C G T A C G T C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGGGTTTGCCAGGCCC
GGGAATTTCC------
 A T C G A C T G A C T G A C T G C G A T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A T G C A G T C A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T