Information for 4-ATGCTGCCAC (Motif 2)

G C T A C G A T T A C G G A T C G C A T C T A G G A T C G T A C T G C A T A G C
Reverse Opposite:
A T C G A C G T C A T G C T A G G A T C C G T A C T A G A T G C G C T A C G A T
p-value:1e-23
log p-value:-5.462e+01
Information Content per bp:1.646
Number of Target Sequences with motif147.0
Percentage of Target Sequences with motif17.67%
Number of Background Sequences with motif3411.4
Percentage of Background Sequences with motif7.07%
Average Position of motif in Targets46.8 +/- 24.9bp
Average Position of motif in Background50.6 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ATGCTGCCAC-
-TGCTGACTCA
 G C T A C G A T T A C G G A T C G C A T C T A G G A T C G T A C T G C A T A G C A C G T
A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ATGCTGCCAC---
AGATGCTRCTRCCHT
 A C G T A C G T G C T A C G A T T A C G G A T C G C A T C T A G G A T C G T A C T G C A T A G C A C G T A C G T A C G T
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

Mafb/MA0117.2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATGCTGCCAC
AAAATGCTGACT-
 A C G T A C G T A C G T G C T A C G A T T A C G G A T C G C A T C T A G G A T C G T A C T G C A T A G C
C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATGCTGCCAC
AATTTGCTGAC--
 A C G T A C G T A C G T G C T A C G A T T A C G G A T C G C A T C T A G G A T C G T A C T G C A T A G C
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ATGCTGCCAC
NATGTTGCAA-
 A C G T G C T A C G A T T A C G G A T C G C A T C T A G G A T C G T A C T G C A T A G C
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:ATGCTGCCAC-
-VGCTGWCAVB
 G C T A C G A T T A C G G A T C G C A T C T A G G A T C G T A C T G C A T A G C A C G T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:ATGCTGCCAC-
---TTGCCAAG
 G C T A C G A T T A C G G A T C G C A T C T A G G A T C G T A C T G C A T A G C A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:ATGCTGCCAC-
--CGTGCCAAG
 G C T A C G A T T A C G G A T C G C A T C T A G G A T C G T A C T G C A T A G C A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:ATGCTGCCAC
----TGCCAA
 G C T A C G A T T A C G G A T C G C A T C T A G G A T C G T A C T G C A T A G C
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:ATGCTGCCAC--
---ATGCCAACC
 G C T A C G A T T A C G G A T C G C A T C T A G G A T C G T A C T G C A T A G C A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C