Information for 8-GCATGCATGCAGG (Motif 12)

C A T G A G T C G T C A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C T G A C T G
Reverse Opposite:
A G T C G T A C A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G G T A C
p-value:1e-5
log p-value:-1.199e+01
Information Content per bp:1.943
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.37%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.2 +/- 1.9bp
Average Position of motif in Background6.5 +/- 0.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCATGCATGCAGG--
SCAGYCADGCATGAC
 C A T G A G T C G T C A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCATGCATGCAGG---
GCAGCCAAGCGTGACN
 C A T G A G T C G T C A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCATGCATGCAGG
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T C A T G A G T C G T C A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C T G A C T G
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GCATGCATGCAGG
NNTNTCATGAATGT---
 A C G T A C G T A C G T A C G T C A T G A G T C G T C A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C T G A C T G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCATGCATGCAGG--
NNCATTCATTCATNNN
 A C G T C A T G A G T C G T C A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

GCM1/MA0646.1/Jaspar

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GCATGCATGCAGG---
-----CATGCGGGTAC
 C A T G A G T C G T C A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

GCM2/MA0767.1/Jaspar

Match Rank:7
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GCATGCATGCAGG--
-----TATGCGGGTA
 C A T G A G T C G T C A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GCATGCATGCAGG
--TBGCACGCAA-
 C A T G A G T C G T C A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C T G A C T G
A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GCATGCATGCAGG-----
--NNNNATGCGGGTNNNN
 C A T G A G T C G T C A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

PAX9/MA0781.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCATGCATGCAGG---
TGCAGTCATGCGTGACG
 A C G T C A T G A G T C G T C A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G