Information for 1-BRGCGCCCCCTRGTGG (Motif 1)

A G C T C T A G T A C G G A T C C A T G T G A C A G T C G T A C G A T C G T A C G C A T C T A G A T C G G C A T A T C G T C A G
Reverse Opposite:
A G T C A T G C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C G A
p-value:1e-350
log p-value:-8.074e+02
Information Content per bp:1.619
Number of Target Sequences with motif304.0
Percentage of Target Sequences with motif37.30%
Number of Background Sequences with motif596.8
Percentage of Background Sequences with motif1.24%
Average Position of motif in Targets51.3 +/- 18.4bp
Average Position of motif in Background49.9 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.98
Offset:-3
Orientation:forward strand
Alignment:---BRGCGCCCCCTRGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A G C T C T A G T A C G G A T C C A T G T G A C A G T C G T A C G A T C G T A C G C A T C T A G A T C G G C A T A T C G T C A G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:BRGCGCCCCCTRGTGG---
TAGCGCCCCCTGGTGGCCA
 A G C T C T A G T A C G G A T C C A T G T G A C A G T C G T A C G A T C G T A C G C A T C T A G A T C G G C A T A T C G T C A G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-BRGCGCCCCCTRGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A G C T C T A G T A C G G A T C C A T G T G A C A G T C G T A C G A T C G T A C G C A T C T A G A T C G G C A T A T C G T C A G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--BRGCGCCCCCTRGTGG
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A G C T C T A G T A C G G A T C C A T G T G A C A G T C G T A C G A T C G T A C G C A T C T A G A T C G G C A T A T C G T C A G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:BRGCGCCCCCTRGTGG--
---GGCCYCCTGCTGDGH
 A G C T C T A G T A C G G A T C C A T G T G A C A G T C G T A C G A T C G T A C G C A T C T A G A T C G G C A T A T C G T C A G A C G T A C G T
A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:BRGCGCCCCCTRGTGG-
-----CCCCCTGCTGTG
 A G C T C T A G T A C G G A T C C A T G T G A C A G T C G T A C G A T C G T A C G C A T C T A G A T C G G C A T A T C G T C A G A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:forward strand
Alignment:BRGCGCCCCCTRGTGG--
---GACCCCCCGCTGTGC
 A G C T C T A G T A C G G A T C C A T G T G A C A G T C G T A C G A T C G T A C G C A T C T A G A T C G G C A T A T C G T C A G A C G T A C G T
A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

PB0101.1_Zic1_1/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:BRGCGCCCCCTRGTGG--
----CCCCCCCGGGGGNN
 A G C T C T A G T A C G G A T C C A T G T G A C A G T C G T A C G A T C G T A C G C A T C T A G A T C G G C A T A T C G T C A G A C G T A C G T
A C G T A C G T A C G T A C G T T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

ZIC1/MA0696.1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:BRGCGCCCCCTRGTGG-
---GACCCCCCGCTGTG
 A G C T C T A G T A C G G A T C C A T G T G A C A G T C G T A C G A T C G T A C G C A T C T A G A T C G G C A T A T C G T C A G A C G T
A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

PB0103.1_Zic3_1/Jaspar

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:BRGCGCCCCCTRGTGG--
---CCCCCCCGGGGGGGT
 A G C T C T A G T A C G G A T C C A T G T G A C A G T C G T A C G A T C G T A C G C A T C T A G A T C G G C A T A T C G T C A G A C G T A C G T
A C G T A C G T A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T