Information for 6-TCTGCTGCCA (Motif 3)

A C G T A G T C A C G T A C T G A T G C A C G T A C T G A T G C A G T C C G T A
Reverse Opposite:
A C G T A C T G A T C G A G T C C G T A A T C G A G T C C G T A C T A G C G T A
p-value:1e-14
log p-value:-3.372e+01
Information Content per bp:1.936
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.51%
Number of Background Sequences with motif111.5
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets51.6 +/- 27.5bp
Average Position of motif in Background49.0 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TCTGCTGCCA--
---CGTGCCAAG
 A C G T A G T C A C G T A C T G A T G C A C G T A C T G A T G C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.67
Offset:4
Orientation:forward strand
Alignment:TCTGCTGCCA--
----TTGCCAAG
 A C G T A G T C A C G T A C T G A T G C A C G T A C T G A T G C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TCTGCTGCCA---
---GGTGCCAAGT
 A C G T A G T C A C G T A C T G A T G C A C G T A C T G A T G C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:TCTGCTGCCA-
-----TGCCAA
 A C G T A G T C A C G T A C T G A T G C A C G T A C T G A T G C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TCTGCTGCCA---
----ATGCCAACC
 A C G T A G T C A C G T A C T G A T G C A C G T A C T G A T G C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCTGCTGCCA--
GGTGYTGACAGS
 A C G T A G T C A C G T A C T G A T G C A C G T A C T G A T G C A G T C C G T A A C G T A C G T
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TCTGCTGCCA
AATTTGCTGAC-
 A C G T A C G T A C G T A G T C A C G T A C T G A T G C A C G T A C T G A T G C A G T C C G T A
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TCTGCTGCCA--
--VGCTGWCAVB
 A C G T A G T C A C G T A C T G A T G C A C G T A C T G A T G C A G T C C G T A A C G T A C G T
A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCTGCTGCCA---
-CTGTTGCTAGGS
 A C G T A G T C A C G T A C T G A T G C A C G T A C T G A T G C A G T C C G T A A C G T A C G T A C G T
A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0041.1_Mafb_1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TCTGCTGCCA----
AAATTTGCTGACTTAGA
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A T G C A C G T A C T G A T G C A G T C C G T A A C G T A C G T A C G T A C G T
G C T A C T G A C G T A G C A T C A G T G C A T C A T G G T A C G C A T C A T G C G T A A G T C C G A T G C A T C T G A C T A G G T A C